View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14903_high_14 (Length: 216)
Name: NF14903_high_14
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 44109504 - 44109651
Alignment:
| Q |
21 |
ctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgcgtattgat |
120 |
Q |
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| T |
44109504 |
ctcgcactatcagcaaacgctttgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgtgtattgat |
44109603 |
T |
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| Q |
121 |
gcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgtt |
168 |
Q |
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| T |
44109604 |
gcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgtt |
44109651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 40276437 - 40276557
Alignment:
| Q |
47 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatata-----atgcgtattgatgcgcaatgttgcctttagttg |
141 |
Q |
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| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
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| Q |
142 |
tgtttcccatgcaaatctatt |
162 |
Q |
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| T |
40276537 |
tgtttcccatgcaagtctatt |
40276557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 40450823 - 40450765
Alignment:
| Q |
47 |
ggtatgtattatcttttatctgatcatcatcattta-tctttttaaatattgtgtataa |
104 |
Q |
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| T |
40450823 |
ggtatgtattaccttttctctcatcatcttcatttaatctttttaaatattgtgtataa |
40450765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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