View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14903_high_3 (Length: 478)
Name: NF14903_high_3
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 183 - 461
Target Start/End: Complemental strand, 49689757 - 49689478
Alignment:
| Q |
183 |
ctaagtgaatgagttaaagtggttaataagctccattaaacaacaaataattctagagaatctaaatttgaaaaaa-ttcttaatcagattacaacgacc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49689757 |
ctaagtgaatgagttaaagtggttaataagctccattaaacaacgaataattctagagaatctaaatttgaaaaaaattcttaatcagattacaacgacc |
49689658 |
T |
|
| Q |
282 |
ttcttcacataggaactcaggaaccgacaggtnnnnnnnncgggagtaaatctgatcatcatacaattaaagtgtgtaggagaaaataagaagtgtatag |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49689657 |
ttcttcacataggaactcaggaaccgacaggtaaaaaaaacgggattaaatctgatcatcatacaattaaagtgtgtaggagaaaataagaagtgtatag |
49689558 |
T |
|
| Q |
382 |
agacgtagatctcaaagctgacagaacaaatggatttaactgaaaaaaccgccaaataaccaacaggtactagcaactca |
461 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49689557 |
aaacatagatctcaaagctgacagaacaaatggatttaactgaaaaaaccgccaaataatcaacaggtactagcaactca |
49689478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 49689940 - 49689843
Alignment:
| Q |
1 |
catcaataaaaaatgagattaaatgaagagaagttagcaatctcgaatttcccacttattcatttaagtgtgaatttctaatcattagtctattcgac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49689940 |
catcaataaaaaatgagattaaatgaagagaagttaacaatctcgaatttcccacttattcatttaagtgtaaatttctaatcattagtctattcgac |
49689843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University