View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14903_low_1 (Length: 929)
Name: NF14903_low_1
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 1 - 901
Target Start/End: Complemental strand, 13199994 - 13199098
Alignment:
| Q |
1 |
ggtaattgattaatttgcgatttctttcccttagctttatgatttcactattttaattcaaaattatcaataaataacaattcacaagcttagcattttc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13199994 |
ggtaattgattaatttgtgatttctttcccttagctttatgatttcactattttaattcaaaattatcaataaataacaattcacaagcttagcattttc |
13199895 |
T |
|
| Q |
101 |
cttttctctatatttcagattcataggcaaacatgttcgtagttatttccccatcacgcttcacttagacgacgatccacaagctttccatccaaaccga |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13199894 |
cttttatctatatttcagattcataggcaaacatgttcgtagttatttccctatcacgcttcacttagacgacgatccacaagctttccatccaaaccaa |
13199795 |
T |
|
| Q |
201 |
tcttatggtttgtattaacatagaaagtggatacaatagtttgtattttagcaagttgcaccatttaatttggatgataaaatcaatatttttcttttta |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
13199794 |
tcttatggtttgtattaacatagaaa---------atagtttgtattttagcaagttgcaccatttaatttggttgataaaaccaatatttttcttttta |
13199704 |
T |
|
| Q |
301 |
atatagctatagtttgtatcttgttgttattaaaccattgatgtaaaaataacagcatttcctttatgcagtttttgcctatgaaccacattcagttttt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13199703 |
atatagctatagtttgtatcttgttgttattaaaccattgatataaaaataacagcatttcctttatgcagtttttgcctatgagccacattcagttttt |
13199604 |
T |
|
| Q |
401 |
ccattcggcatatttgcacttcttgataacgtagacttccctattccaaatacaagatttcttgtcagcagctcagtaagaattttgcttgtgannnnnn |
500 |
Q |
| |
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| T |
13199603 |
ccattcggcatatttgcacttcttgataacgtagacttccctattccaaatataagatttcttgtcagcagctcagtaagaattttgcttgtgacttttt |
13199504 |
T |
|
| Q |
501 |
nnnnccttttctt--aaattaataat---taatgaaaggtggaaaggattataaatttataatttaattgatctcatctcgttttatggattaacaggtt |
595 |
Q |
| |
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|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
13199503 |
tttttttttttttttaaattaataataattaatgaaaggtggaaaggattataaatttataatttaattgttctcatcttgttttatggattaataggtt |
13199404 |
T |
|
| Q |
596 |
ttctacataccatttttaagacaagtatggatatggttaggttttacaacaggggataagaagaatttaatttccttgttggaagctggcaatagttgca |
695 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13199403 |
ttctacataccatttttgagacaagtatggatatggttgggttttacatcagtggataagaagaatttaatttccttgttggaagctggcaatagttgca |
13199304 |
T |
|
| Q |
696 |
tgttagtacctggtggaaaccgtgaaaccctttttatggagcatgggttcgaggtacatgacaatatgacattaatggtgaagtttatcttgcacaagtg |
795 |
Q |
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| T |
13199303 |
tgttagtacctggtggaaaccgtgaaaccctttttatggagcatgggttcgaggtacatgacaatatgacattaatggtgaagtttatcttgcacaagtg |
13199204 |
T |
|
| Q |
796 |
cttgattttgtggagacctgtggtccacacaaaatataaatattcttgctacatgtataaagttattttaactatcggttcaataaattttattattaaa |
895 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13199203 |
cttgattttgtggagacctgtggtccacaaaaaatataaatattcttgctacatgtataaagttattttaactatcggttcaataaattttattattaaa |
13199104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 347 - 486
Target Start/End: Original strand, 30661039 - 30661181
Alignment:
| Q |
347 |
aaataacagcatttcctttatgcagtttttgcctatgaaccacattcagtttttccattcggcatatttgcacttcttgataacgtagacttc---ccta |
443 |
Q |
| |
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|||||||| ||| ||||||||||||||||| |||||| |||||||||||||| ||||| ||||| |||||||||| ||| ||| |||||||| |||| |
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| T |
30661039 |
aaataacaccatctcctttatgcagttttttgctatgagccacattcagttttcccatttggcatttttgcacttcatgacaacatagacttcatgccta |
30661138 |
T |
|
| Q |
444 |
ttccaaatacaagatttcttgtcagcagctcagtaagaatttt |
486 |
Q |
| |
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||||||||| |||||||||||| ||||| |||||||| |||| |
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| T |
30661139 |
ttccaaatataagatttcttgttagcagtgcagtaagactttt |
30661181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 589 - 754
Target Start/End: Original strand, 30661257 - 30661422
Alignment:
| Q |
589 |
acaggttttctacataccatttttaagacaagtatggatatggttaggttttacaacaggggataagaagaatttaatttccttgttggaagctggcaat |
688 |
Q |
| |
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| T |
30661257 |
acaggctttctacataccatatttaagacaaatatggacatggttaggtttttcatatgtaacgaagaaaaatttaatatccttgttggtagctggtgaa |
30661356 |
T |
|
| Q |
689 |
agttgcatgttagtacctggtggaaaccgtgaaaccctttttatggagcatgggttcgaggtacat |
754 |
Q |
| |
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|||||||| ||||||||||||||| | ||||| ||||||||||| ||||| | ||||||||| |
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| T |
30661357 |
agttgcattatagtacctggtggaatgagagaaacactttttatggaacatggttgtgaggtacat |
30661422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 30657474 - 30657583
Alignment:
| Q |
107 |
tctatatttcagattcataggcaaacatgttcgtagttatttccccatcacgcttcacttagacgacgatccacaagctttccatccaaaccgatcttat |
206 |
Q |
| |
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|||| |||||||||||||| ||||||||||| | |||||||||||||| || |||||||| || ||| || |||||||||||| || | | ||||| |
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| T |
30657474 |
tctacatttcagattcatatgcaaacatgtttgcagttatttccccattactcttcactt---ggaggatgcagaagctttccatcttaatcaaccttat |
30657570 |
T |
|
| Q |
207 |
ggtttgtattaac |
219 |
Q |
| |
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||||||||||||| |
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| T |
30657571 |
ggtttgtattaac |
30657583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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