View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14903_low_10 (Length: 299)
Name: NF14903_low_10
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_low_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 41154063 - 41154362
Alignment:
| Q |
1 |
taacttaatttgagatgaagataaatttaagctaatggaccaagtaaacaagtnnnnnnngttcatttacgaattcaagtataactataagagtcac--t |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41154063 |
taacttaatttgagatgaagataaatttaagctaatggaccaagtaaacaagtaaaaaaagttcatttacgaattcaagtataactataagagtcacttt |
41154162 |
T |
|
| Q |
99 |
ttttcatatttgacatcaagataaatttaagccaatagaccaagtaaacaagtnnnnnnnnnttcatttacgatttcaaatataggagtcacttttttca |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41154163 |
ttttcatatttgacatcaagataaatttaagtcaatagaccaagtaaacaagtaaaaaaaaatccatttacgatttcaaatataggagtcacttttttca |
41154262 |
T |
|
| Q |
199 |
tatactgagtcacttatttatttacctcatttctcgtccatgtaagactatcactcacatttgaatttcaattaaaaaatgcaaaccatatattttagtt |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
41154263 |
tatac-gagtcacttatttatttacctcatttctcgtccatgtaagactatcactcacatttaaattccaattaaaaattgcaaatcatatattttagtt |
41154361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University