View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14903_low_14 (Length: 250)
Name: NF14903_low_14
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_low_14 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 15157533 - 15157775
Alignment:
| Q |
8 |
aaatgaaacataataaaatgaagtggaacggaatgagatggaataaaactgacattatattgtttgaatattttatgacggaatgaattagaatatgtaa |
107 |
Q |
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| T |
15157533 |
aaatgaaacataataaaatgaagtggaacgaaatgagatgaaataaaacttacattatattgtttgaatattttatgatggaacgatttagaatatgtaa |
15157632 |
T |
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| Q |
108 |
aagttgcatttctctctttttctttctggtcaacaaagttgaatttctctttgattttcacttaagcacggagatcattgtttcgtgggtctcgtaaaat |
207 |
Q |
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| T |
15157633 |
aagttgcatttctctctttttctttctggtcaacaaagttgaatttctctttgattttcacttaagcacggagatcattgtttcgtgggtctcgtaaaat |
15157732 |
T |
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| Q |
208 |
tttatcttggcaaaaatgaaccacacctcattttaaatcattt |
250 |
Q |
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| T |
15157733 |
tttatcttggcaaaaatgaaccacacctcattttaaatcattt |
15157775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 17998991 - 17999038
Alignment:
| Q |
45 |
atggaataaaactgacattatattgtttgaatattttatgacggaatg |
92 |
Q |
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| T |
17998991 |
atggaataaaaattacattctattgtttggatattttatgacggaatg |
17999038 |
T |
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