View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14903_low_16 (Length: 231)
Name: NF14903_low_16
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 41866366 - 41866567
Alignment:
| Q |
16 |
caaacttctccgaccaccgtcccacctcaatcgccactcgccggagaagtttctgaaaccgcgtaatcgaacgattcggagtagtgacggcgatggctga |
115 |
Q |
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| T |
41866366 |
caaacttctccgaccaccgtacaacctcaatcgccactcgccggagaagtttctgaaaccgcgtaatcgaacgattcggagtagtgacggcgatggctga |
41866465 |
T |
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| Q |
116 |
ttcagacaatgaatccggaggagcaccgaacgccggcaacagcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaata |
215 |
Q |
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| T |
41866466 |
ttcagacaatgaatccggaggagcaccgaacgccggcaacagcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaata |
41866565 |
T |
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| Q |
216 |
at |
217 |
Q |
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|| |
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| T |
41866566 |
at |
41866567 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 23569664 - 23569719
Alignment:
| Q |
156 |
agcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcag |
211 |
Q |
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|||||| | |||||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
23569664 |
agcgagatgtcaccacgagaacaagaccgatttcttccaatagcaaacgtaagcag |
23569719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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