View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14903_low_2 (Length: 578)
Name: NF14903_low_2
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Complemental strand, 54396870 - 54396317
Alignment:
| Q |
8 |
agaagcaaaggggaaaccatcttctaaagttgaccatacagaggcattcaagttagattttttcactatggatgatctttatgtagggaacgtaatgacg |
107 |
Q |
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| T |
54396870 |
agaatcaaaagggaaaccatcttctaaagttgaccatacagaggcattcaagttagcttttttcactatggatgatctttatgtagggaacgtaatgacg |
54396771 |
T |
|
| Q |
108 |
ctgcaatttcctatcagagaatatgctaacttcttgccnnnnnnngtagctgactacattcctttctccaagtcacaactaccaagccttcttcaaatat |
207 |
Q |
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| T |
54396770 |
ctgcaatttcctgtcagagaatatgctaacttcttgccaaaaaaagtagctgactacattcctttctccaagtcacaactaccaagccttcttcaactct |
54396671 |
T |
|
| Q |
208 |
tctctctcacaaaagattccccccaaggtgaagacatgaaagacataattgatcaatgtgaatctgaacccacaaaaggggagaccaaagcttgtcctac |
307 |
Q |
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| T |
54396670 |
tctctctcacaaaagattccccccaaggtgaagacatgaaagacataattgatcaatgtgaatttgaacccacaaaaggggagaccaaagcttgtcctac |
54396571 |
T |
|
| Q |
308 |
ttcattagagtccatgcttgaatttgttcatagtgttcttggtactgaggccagatataacatccacacaactagctatcccacaacatcaggtgcacgt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54396570 |
ttcattagagtccatgcttgaatttgttcatagtgttcttggtactgaggccagatataacattcacacaactagctatcccacaacatcaggtgcacgt |
54396471 |
T |
|
| Q |
408 |
ttgcagaactacaccattttgaaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctaggccttacccttatgctctttactattgcc |
507 |
Q |
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| T |
54396470 |
ttgcagaactacaccattttgaaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctaggccttacccttatgctctttactattgcc |
54396371 |
T |
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| Q |
508 |
actacctagacatagggagtaaggtcttcaaagttcttctaaagggtcaatatg |
561 |
Q |
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| T |
54396370 |
actacctagacatagggagtaaggtcttcaaagttcttctaaagggtcaatatg |
54396317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 561
Target Start/End: Complemental strand, 54381973 - 54381433
Alignment:
| Q |
21 |
aaaccatcttctaaagttgaccatacagaggcattcaagttagattttttcactatggatgatctttatgtagggaacgtaatgacgctgcaatttccta |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
54381973 |
aaactatcttctaaagttgaccatacagaggcattcaagttagctttttttactctggatgatctttacgtagggaatgtaatgaccctgcaatttccta |
54381874 |
T |
|
| Q |
121 |
tcagagaatatgctaacttcttgccnnnnnnngtagctgactacattcctttctccaagtcacaactaccaagccttcttcaaatattctctctcacaaa |
220 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||| ||||||| |||||||| |
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| T |
54381873 |
tcagagaatatgctcgcttcttgccaagaaaagtagctgactacattcctctctccaagtcgcaactacctagccttcttcaactattctcactcacaaa |
54381774 |
T |
|
| Q |
221 |
agattccccccaaggtgaagacatgaaagacataattgatcaatgtgaatctgaacccacaaaaggggagaccaaagcttgtcctacttcattagagtcc |
320 |
Q |
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||| || |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||| ||||| ||||||||| |
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| T |
54381773 |
agactctccccaaggtgaagatatgaaagacataattgatcaatgtgagtttgaacccacaaaaggggagaccaaggcctgtcccacttctttagagtcc |
54381674 |
T |
|
| Q |
321 |
atgcttgaatttgttcatagtgttcttggtactgaggccagatataacatccacacaactagctatcccacaacatcaggtgcacgtttgcagaactaca |
420 |
Q |
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||||||||||||||||| || ||||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||| |
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| T |
54381673 |
atgcttgaatttgttcacagcgttctcggtgccgaggccagatataacattcacacaactagctatccgacaacatcaggtgtgcgtttgcaaaactaca |
54381574 |
T |
|
| Q |
421 |
ccattttgaaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctaggccttacccttatgctctttactattgccactacctagacat |
520 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54381573 |
ccattttggaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctagaccttacccttatgctctttactattgccactacctagacat |
54381474 |
T |
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| Q |
521 |
agggagtaaggtcttcaaagttcttctaaagggtcaatatg |
561 |
Q |
| |
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||| |||| | |||||||||||||||||| ||||||||||| |
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| T |
54381473 |
aggcagtaggatcttcaaagttcttctaaggggtcaatatg |
54381433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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