View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14903_low_5 (Length: 472)
Name: NF14903_low_5
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 43129618 - 43130053
Alignment:
| Q |
17 |
gaaatctcttgttacattcttaatgtgcatacnnnnnnnnnnnatcacgtaacttactagttaagtaattgtttcatctaaatttattttcatttttaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43129618 |
gaaatctcttgttacattcttaatgtgcatacttttttt----atcacgtaacttactagttaagtaattgtttcatctaaatttattttcatttttaca |
43129713 |
T |
|
| Q |
117 |
ttgtgtttagatgatgaggatccatagaaccttgacatcattgcacgttacacccgtaaggtacattgtgcttattatttgcttgaattttgagtaattt |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
43129714 |
ttgtgtttagatgatgaggattcatagaaccttgacatcattgcacgttacacccgtaaggtacattgtgcctattatttgcttgaatttcgagtaattt |
43129813 |
T |
|
| Q |
217 |
gagttttttatatttataacatgtaactcatgatttctccaacaaaaatccacatgtttcatccaaatttgtgtatataataaaatgtgttttgtatatg |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43129814 |
gagttttttaaatttataacatgtaactcatgatttctccaacaaaaatccacatgtttcatccaaatttgtgtatataataaaatgtgttttgtatatg |
43129913 |
T |
|
| Q |
317 |
gagttttctttagtgtacaatgccaatggatggaggcaaggatgtttgtgtgtggaaattttaagaaaacacagttatggggtttgaataaaatttaggg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43129914 |
gagttttctttagtgtacaatgccaatggatggaggcaaggatgtttgtgtgtggaaattttaagaaaacacagttatggggtttgaataaaatttaggg |
43130013 |
T |
|
| Q |
417 |
ttaaataagataatagtccccctaaatatagtccctctaa |
456 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
43130014 |
ttaaataagttaatggtccccctaaatatagtccctctaa |
43130053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University