View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14903_low_7 (Length: 403)
Name: NF14903_low_7
Description: NF14903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14903_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 32658248 - 32657862
Alignment:
| Q |
1 |
attatacttctaaacaaactatcctaaatcatcctaatcatagagcgtttgagtatttgcatgagcgtatatattgtcactatttgttggacctgcagtg |
100 |
Q |
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| T |
32658248 |
attatacttctaaacaaactatcctaaatcatcctaatcatagagcgtttgagtatttgcatgagcgtatatattgtcactatttgttggacctgcagtc |
32658149 |
T |
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| Q |
101 |
atcatcactagaccttagaaatttaaatcgatcggggacccaattttagtccaagattgaacactgattaagctaaatgtactctacggtttactttatt |
200 |
Q |
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| T |
32658148 |
atcatcactagaccttagaaatttaaatcgatcggggacccaattttagtccaagattgaacactgattaagctacatgtactctacggtttactttatt |
32658049 |
T |
|
| Q |
201 |
aatcatcacacataagtttctatataacaagatgtatccatgttcttctactagacagtagtacacttggtccatatagtttggcattgatggctcaatg |
300 |
Q |
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| T |
32658048 |
aatcatcacacataagtttctatataacaagatgtatccatgttcttctactagacagtagtacacttggtccatatagtttggcattgatggctcgatg |
32657949 |
T |
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| Q |
301 |
attcaagcttgagttcatcaactatatgttttaagatgttttattgttggtccttggtacatgtgattgatctttagacgaaggaat |
387 |
Q |
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| T |
32657948 |
attcaagcttgagttcatcaactatatgttttaagatgttttatggttggtccttggtacatgtgattgatctttagacgaaggaat |
32657862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 32654014 - 32653951
Alignment:
| Q |
267 |
ttggtccatatagtttggcattgatggctcaatgattcaagcttgagttcatcaactatatgttt |
331 |
Q |
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| T |
32654014 |
ttggtccagatagtttggcattgatgactagacgattgaagcttgagttca-caactagatgttt |
32653951 |
T |
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