View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14904_high_10 (Length: 423)

Name: NF14904_high_10
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14904_high_10
NF14904_high_10
[»] chr4 (1 HSPs)
chr4 (22-68)||(53302778-53302824)
[»] chr2 (3 HSPs)
chr2 (22-68)||(30269369-30269415)
chr2 (22-68)||(31331878-31331924)
chr2 (22-68)||(31338607-31338653)
[»] chr6 (1 HSPs)
chr6 (20-67)||(30825201-30825248)
[»] chr8 (2 HSPs)
chr8 (22-68)||(25641257-25641303)
chr8 (105-163)||(34863703-34863761)
[»] chr3 (1 HSPs)
chr3 (22-68)||(7403857-7403903)
[»] chr5 (3 HSPs)
chr5 (22-68)||(5075906-5075952)
chr5 (22-68)||(7413271-7413317)
chr5 (22-68)||(37190658-37190704)
[»] chr1 (2 HSPs)
chr1 (298-404)||(11327501-11327609)
chr1 (298-404)||(11485522-11485630)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 53302778 - 53302824
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  53302778 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 53302824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 30269369 - 30269415
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30269369 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 30269415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 31331924 - 31331878
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  31331924 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 31331878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 31338653 - 31338607
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  31338653 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 31338607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 30825201 - 30825248
Alignment:
Q  20 aggcaaaatcaaaacaataaccaacacaatacaaaactcacacttcat 67  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  30825201 aggcaaaatcaaaataataaccaacacaatacaaaactcacacttcat 30825248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 25641257 - 25641303
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  25641257 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 25641303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 34863703 - 34863761
Alignment:
Q  105 gaagcttgtggttgcgcatagaacagatctatggaaattgaagaagcagaacacgatta 163  Q
    ||||| ||||||| |  |||||||||||| |||||||||||||||||||||| ||||||    
T  34863703 gaagcatgtggttacaaatagaacagatccatggaaattgaagaagcagaacgcgatta 34863761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 7403903 - 7403857
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  7403903 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 7403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 5075952 - 5075906
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5075952 gcaaaatgaaaacaataaccaacacaacacaaaactcacacttcatc 5075906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 7413271 - 7413317
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  7413271 gcaaaatgaaaacaataaccaacacaacacaaaactcacacttcatc 7413317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 37190658 - 37190704
Alignment:
Q  22 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 68  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  37190658 gcaaaatgaaaacaagaaccaacgcaacacaaaactcacacttcatc 37190704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 11327501 - 11327609
Alignment:
Q  298 tagggtttctatcaaagtgatgaatgcagaaaac-tagcataattgctatggatgaagcttaagatgaggtttttacgaagatctt-atgcagaaaattc 395  Q
    ||||||||| |||| |||||||||||| | |||| | |||||| ||| ||| ||||||| ||||||||||| |  | || |||||| ||| |||||||||    
T  11327501 tagggtttcgatcatagtgatgaatgcgggaaacttggcataactgcaatgaatgaagcctaagatgaggtctacatgatgatcttgatgtagaaaattc 11327600  T
Q  396 acagtgaaa 404  Q
    |||||||||    
T  11327601 acagtgaaa 11327609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 11485522 - 11485630
Alignment:
Q  298 tagggtttctatcaaagtgatgaatgcagaaaac-tagcataattgctatggatgaagcttaagatgaggtttttacgaagatctt-atgcagaaaattc 395  Q
    ||||||||| |||| |||||||||||| | |||| | |||||| ||| ||| ||||||| ||||||||||| |  | || |||||| ||| |||||||||    
T  11485522 tagggtttcgatcatagtgatgaatgcgggaaacttggcataactgcaatgaatgaagcctaagatgaggtctacatgatgatcttgatgtagaaaattc 11485621  T
Q  396 acagtgaaa 404  Q
    |||||||||    
T  11485622 acagtgaaa 11485630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University