View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14904_high_12 (Length: 389)
Name: NF14904_high_12
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 44883176 - 44882809
Alignment:
| Q |
19 |
aactatgccactaataccacaaagtgttgtacctgaggtgaatccaagtgtttataaaactcctatggcatcaaatccatcttttattcaagttcgttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44883176 |
aactatgccactaataccacaaagtgttgtacctgaggtgaatccaagtgtttataaaactcctatggcatcaaatccatcttttattcaagttctttct |
44883077 |
T |
|
| Q |
119 |
aatcaatatcagcagcaatacgtgagtttatctcaaaatattcatcatccaccacagaagactatttatggttatgaatatggtggaggcggagctacgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44883076 |
aatcaatatcagcagcaatacgtgagtttatctcaaaatattcatcatccaccacagaagactatttatggttatgaatatggtggaggtggagctacgc |
44882977 |
T |
|
| Q |
219 |
aagaacaagtatactacacacaacagcagcctgcaaatgcaaatgcacctcctcagtaccaatccatgaccccagcacctgctgcagcagcactattaga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44882976 |
aagaacaagtatactacacacaacagcagcccgcaaatgcaaatgcacctcctcagtaccaatccatgaccccagcacctgctgtagcagcactattaga |
44882877 |
T |
|
| Q |
319 |
tgtttcaaaacaatttcctatagacaacaacatccagcagcaaaacagaacttcacagcgagtataat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44882876 |
tgtttcaaaacaatttcctatagacaacaacatccagcagcaaaacagaacttcacagcaagtataat |
44882809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 9019638 - 9019764
Alignment:
| Q |
151 |
tcaaaatattcatcatccaccacagaagactatttatggttat---gaatatggtggaggcggagctacgcaagaacaagtatactacacacaacagcag |
247 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
9019638 |
tcaaaatattcatcatccaccacagc---ctttttatggttattatgaatatggtggag------ctaagcaagaacaagtattctacccacaacagcag |
9019728 |
T |
|
| Q |
248 |
cctgcaaatgcaaatgcacctcctcagtaccaatccatgacc |
289 |
Q |
| |
|
| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9019729 |
c------atgcaaatgcacctccttagtaccaatctatgacc |
9019764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 8978382 - 8978469
Alignment:
| Q |
258 |
caaatgcacctcctcagtaccaatccatgaccccagcacctgctgcagcagcactattagatgtttcaaaacaatttcctatagacaa |
345 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||| ||| || | | ||| |||||||||||||||||||| |||| |
|
|
| T |
8978382 |
caaatgcaccttctcagtaccaatccatgaccacagcagtcgctgctgcaacaatgtccgatttttcaaaacaatttcctatatacaa |
8978469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 1253590 - 1253553
Alignment:
| Q |
211 |
agctacgcaagaacaagtatactacacacaacagcagc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1253590 |
agctacgcaagaacaagtatactacacacaaaagcagc |
1253553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University