View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_high_17 (Length: 338)
Name: NF14904_high_17
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 91 - 322
Target Start/End: Complemental strand, 17693114 - 17692882
Alignment:
| Q |
91 |
tgaaggagtatcttagaaattgtggcccacaattaaacgagggactgacgcgcgtaacatacatgt---caaatgaggccaaacccttctagttctaggt |
187 |
Q |
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| T |
17693114 |
tgaaggagtatcttagaaattgtggcccacaattagacaagggactgacgcg--taacatacatgttgtcaaatgaggccaaacccttctagttctaggt |
17693017 |
T |
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| Q |
188 |
tatattccagccctaaccaaaatacataaaaagaaaccctaagcacgtttcgcatagctcatcgttccccaacttcgtctctttcagtaaattctctaaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17693016 |
tatattccagccctaaccaaaatacataaaaagaaaccctaagcacgtttcgcatagctcatcgttcctcaacttcgtctctttcagtaaattctctaaa |
17692917 |
T |
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| Q |
288 |
acaataatattgttcttgttatcaatctttgttac |
322 |
Q |
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| T |
17692916 |
acaataatattgttcttgttatcaatctttgttac |
17692882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 17686096 - 17685979
Alignment:
| Q |
181 |
tctaggttatattccagccctaaccaaaatacataaaaagaaaccctaagca-cgtttcgcatagctcatcgttccccaacttcgtctctttcagtaaat |
279 |
Q |
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| T |
17686096 |
tctaggttatattccaaccctaaccaaaatgtataaaaacaaacccaaaacaaccttacgcatagctcatcgttccccaacttggtctctttcagtaaat |
17685997 |
T |
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| Q |
280 |
tctctaaaacaataatatt |
298 |
Q |
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| T |
17685996 |
t-tctaaaaaaaaaatatt |
17685979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 141 - 322
Target Start/End: Original strand, 14650690 - 14650877
Alignment:
| Q |
141 |
cgcgtaacatacatgt---caaatgaggccaaaccctt----ctagttctaggttatattccagccctaaccaaaatacataaaaagaaaccctaagcac |
233 |
Q |
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| T |
14650690 |
cgcgtaacatacatgttgtcaaatgaggccaaacccttagttctagt-ctaggttatattccagtcctaaccaaaatatataaaaagaaaccctaagcac |
14650788 |
T |
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| Q |
234 |
gtttcgcatagctcatcgttccccaacttcgtctctttcagtaaattctctaaaacaataatattgttcttgttatcaatctttgttac |
322 |
Q |
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| T |
14650789 |
gtttcgcatagctcatctttccccaactttgtctctttcagtaaattctctaaaacattaaaattgttcttgttatcaatctttgttac |
14650877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 322
Target Start/End: Original strand, 14659062 - 14659203
Alignment:
| Q |
181 |
tctaggttatattccagccctaaccaaaatacataaaaagaaaccctaagca-cgtttcgcatagctcatcgttccccaacttcgtctctttcagtaaat |
279 |
Q |
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|||||||||||||||| ||||||||||||| ||||||| |||| | || || | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14659062 |
tctaggttatattccaaccctaaccaaaatgtataaaaacaaactcaaaacaacctttcgcatagctcatcgttccccaacttcgtctctttcagtaaat |
14659161 |
T |
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| Q |
280 |
tctctaaaacaataatattgttcttgttatcaatctttgttac |
322 |
Q |
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||||| ||| |||||||||||| |||||||||||| ||||||| |
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| T |
14659162 |
tctctcaaaaaataatattgtt-ttgttatcaatcattgttac |
14659203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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