View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14904_high_18 (Length: 302)

Name: NF14904_high_18
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14904_high_18
NF14904_high_18
[»] chr3 (1 HSPs)
chr3 (12-302)||(55163090-55163380)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 55163090 - 55163380
Alignment:
Q  12 attatatatttgtttttaagccttgcagctatacatatttcttgtaatgtttgtagtattcatttttcgtttttatataatcaatactagaggactaaga 111  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  55163090 attatatatttgtttttaagccttccagctatacatatttcttgtaatgtttgtagtattcatttttcgtttttatataatcaatactagaggactaaca 55163189  T
Q  112 tcaaaatctgttattatctttttgttaaattgaatctgattgccttcattctgtatttgtaggcaatttatttggaacaggtattgagggaaggattctc 211  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55163190 tcaaaatgtgttattatctttttgttaaaatgaatctgattgccttcattctgtatttgtaggcaatttatttggaacaggtattgagggaaggattctc 55163289  T
Q  212 acacccttcagtgaatgggataatgctttggacagcacttcatccatatgggtgctaccaaatgtgcctcacagacaatgatttcaacaac 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55163290 acacccttcagtgaatgggataatgctttggacagcacttcatccatatgggtgctaccaaatgtgcctcacagacaatgatttcaacaac 55163380  T

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