View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_high_19 (Length: 247)
Name: NF14904_high_19
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 45306245 - 45306481
Alignment:
| Q |
1 |
aattaatgaatatgaggaggttgaaattaagaacaaaagaaaaggataacaatgtaataattcttaaaacaaccgcagtggtgagccatgttggttttcc |
100 |
Q |
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| T |
45306245 |
aattaatgaatatgaggaggttgaaattaagaacaaaagaaaaggataacaatgtaataattcttaaaacaaccgcagtggtgagccatgttggttttcc |
45306344 |
T |
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| Q |
101 |
ccatccaacatctgcttcatatattggaaaattacaccaactactaaaaccaattacannnnnnnnncttagaattaggatcagtagcttgtctcaaaca |
200 |
Q |
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| T |
45306345 |
ccatccaaaatctgcttcatatattggaaaattacaccaactactaaaaccaattacatttttttttcttagaattaggatcagtagcttgtctcaaaca |
45306444 |
T |
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| Q |
201 |
ttcagatatcaatgataaattattccctccaaatatt |
237 |
Q |
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| T |
45306445 |
ttcagatatcaatgataaattattccctccaaatatt |
45306481 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 36621690 - 36621766
Alignment:
| Q |
77 |
agtggtgagccatgttggttttccccatccaacatctgcttcatatattggaaaattacaccaactactaaaaccaa |
153 |
Q |
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| T |
36621690 |
agtggtgatccatattggttttccccatccaaaatctgcttcatacattggaaacctacaccaactactaaaaccaa |
36621766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 36626924 - 36626995
Alignment:
| Q |
77 |
agtggtgagccatgttggttttccccatccaacatctgcttcatatattggaaaattacaccaactactaaa |
148 |
Q |
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| T |
36626924 |
agtggtgatccatattggttttccccatccaaaatctgcttcatacattggaaacctacaccaactactaaa |
36626995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 36632165 - 36632237
Alignment:
| Q |
77 |
agtggtgagccatgttggttttccccatccaacatctgcttcatatattggaaaattacaccaactactaaaa |
149 |
Q |
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| T |
36632165 |
agtggtgatccatattggttttccccatccaaaatctgcttcatacatcggaaacctacaccaactactaaaa |
36632237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 34330043 - 34329979
Alignment:
| Q |
86 |
ccatgttggttttccccatccaacatctgcttcatatattggaaaattacaccaactactaaaac |
150 |
Q |
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| T |
34330043 |
ccatattggttttccccacccaaaatcagcttcatacattggaaacctacaccaactactaaaac |
34329979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 34334130 - 34334080
Alignment:
| Q |
93 |
ggttttccccatccaacatctgcttcatatattggaaaattacaccaacta |
143 |
Q |
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| T |
34334130 |
ggttttccccatccaaaatcagcttcatacatcggaaacttacaccaacta |
34334080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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