View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_high_4 (Length: 559)
Name: NF14904_high_4
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 80 - 432
Target Start/End: Complemental strand, 25379491 - 25379139
Alignment:
| Q |
80 |
cggaaagtcaaatgttagtaaatagttagatgttgatgagattcgaacttgatcactttatgactccgaacttactttatatgttgcagaaagatagttg |
179 |
Q |
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| T |
25379491 |
cggaaagtcaaatgttagtaaatagttagttgttgatgagattcgaactttatcactttgtgactccaaacttactttatatgttgcagaaagatagttg |
25379392 |
T |
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| Q |
180 |
gagtgaagaagaagaaaggatgcttgttgaaactcatggcatgattggaaatcgttgggcggagatagcaaagagaattcctggaagaactgagaatgca |
279 |
Q |
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| T |
25379391 |
gagtgaagaagaagaaaggatgcttattgaaactcatggcatgattggaaatcgttgggcagagatagcaaagagaattcctggaagaactgagaatgca |
25379292 |
T |
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| Q |
280 |
ataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaaaccactgatggtaaaccacaatcttctattcttc |
379 |
Q |
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| T |
25379291 |
ataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaaaccactgatggtaaaccacaatcttctattcttc |
25379192 |
T |
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| Q |
380 |
aagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
432 |
Q |
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| T |
25379191 |
aagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
25379139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 423 - 550
Target Start/End: Complemental strand, 25379115 - 25378988
Alignment:
| Q |
423 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
522 |
Q |
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| T |
25379115 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
25379016 |
T |
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| Q |
523 |
ccacttatatctgaatcttatgatgatg |
550 |
Q |
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| T |
25379015 |
ccacttatatctgaatcttatgatgatg |
25378988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 166 - 335
Target Start/End: Complemental strand, 29671358 - 29671189
Alignment:
| Q |
166 |
cagaaagatagttggagtgaagaagaagaaaggatgcttgttgaaactcatggcatgattggaaatcgttgggcggagatagcaaagagaattcctggaa |
265 |
Q |
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| T |
29671358 |
cagaaagatagttggagtgaagaagaagagaaaatattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattccaggaa |
29671259 |
T |
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| Q |
266 |
gaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaa |
335 |
Q |
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| T |
29671258 |
gaactgaaaatgccataaaaaatcattggaatgccacaaaaagaagacaaaattcaagaagaaagaacaa |
29671189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 43866494 - 43866564
Alignment:
| Q |
235 |
tgggcggagatagcaaagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaa |
305 |
Q |
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| T |
43866494 |
tgggcggagattgcgaaaagattgccaggaagaactgagaatgcaataaaaaaccattggaatgcaacaaa |
43866564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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