View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_high_6 (Length: 543)
Name: NF14904_high_6
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_high_6 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 352
Target Start/End: Original strand, 34296102 - 34296440
Alignment:
| Q |
14 |
gctagatcatccacagaggcagaatacaggtctgctgccaatacttcagctgaaatcatgtggctattaaatcttttgagtgaacttggagtaccacatc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34296102 |
gctagatcatccacagaggcagaatacaggtctgctgccaatacttcagctgaaatcatgtggctattaaatcttttgagtgaacttggagtaccgcatc |
34296201 |
T |
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| Q |
114 |
aaacacctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296202 |
aaacacctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattt |
34296301 |
T |
|
| Q |
214 |
tgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccaga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296302 |
tgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccaga |
34296401 |
T |
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| Q |
314 |
ttttcaattctcagagacaaaattggtgtcattgatggt |
352 |
Q |
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| T |
34296402 |
ttttcaattctcagagacaaaattggtgtcattgatggt |
34296440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 31347599 - 31347697
Alignment:
| Q |
118 |
acctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgt |
216 |
Q |
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| T |
31347599 |
acctacactattttgtgataatattggcacaacttacctatgttctaatctcgtatttcattcaagaatgaaacacattgccatggattatcactttgt |
31347697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 24485923 - 24485583
Alignment:
| Q |
14 |
gctagatcatccacagaggcagaatacaggtctgctgccaatacttcagctgaaatcatgtggctattaaatcttttgagtgaacttggagtaccacatc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24485923 |
gctagatcatccacagaggcagaatacaggtctgctgccaatacttcagctgaaatcatgtggctattaaatcttttgagtgaacttggagtaccgcatc |
24485824 |
T |
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| Q |
114 |
aaacacctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattt |
213 |
Q |
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| T |
24485823 |
aaacacctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattt |
24485724 |
T |
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| Q |
214 |
tgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccaga |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24485723 |
tgtgaggcagaaggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccaga |
24485624 |
T |
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| Q |
314 |
ttttcaattctcagagac--aaaattggtgtcattgatggt |
352 |
Q |
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| T |
24485623 |
ttttcaattctcagagacaaaaaattggtgtcattgatggt |
24485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 24494257 - 24493935
Alignment:
| Q |
14 |
gctagatcatccacagaggcagaatacaggtctgctgccaatacttcagctgaaatcatgtggctattaaatcttttgagtgaacttggagtaccacatc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24494257 |
gctagatcatccacagaggcagaatacaggtctgctgccaatacttcagctgaaatcatgtggctattaaatcttttgagtgaacttggagtaccgcatc |
24494158 |
T |
|
| Q |
114 |
aaacacctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494157 |
aaacacctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattt |
24494058 |
T |
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| Q |
214 |
tgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccaga |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494057 |
tgtgaggcagaaggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccaga |
24493958 |
T |
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| Q |
314 |
ttttcaattctcagagacaaaat |
336 |
Q |
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||||||||||||||||||||||| |
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| T |
24493957 |
ttttcaattctcagagacaaaat |
24493935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 58367 - 58037
Alignment:
| Q |
18 |
gatcatccacagaggcagaatacaggtctgctgccaatacttcagctgaaatcatgtggctattaaatcttttgagtgaacttggagtaccacatcaaac |
117 |
Q |
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||||||||| ||| |||||||| ||||||||| |||| ||||||| ||||| |||||||| | |||||||||| | |||||||| || ||| ||||| |
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| T |
58367 |
gatcatccatagaagcagaatataggtctgctaccaacgcttcagcagaaattatgtggctctcaaatcttttgggagaacttggtgttccatctcaaat |
58268 |
T |
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| Q |
118 |
acctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtg |
217 |
Q |
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||||| |||||||| |||||||||||||| ||||| ||||| || ||| |||| |||||||| ||||||||||| ||||||||||||||||| |||||| |
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| T |
58267 |
tcctacacttttttgcgacaatattggcacaacttatttatgctctaattcggtctttcactcaagaatgaagcacattgcacttgattatcactttgtg |
58168 |
T |
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| Q |
218 |
aggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagatttt |
317 |
Q |
| |
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|||||| |||||| ||| ||| | |||||| || || ||| ||||| |||| |||||||||||| | || || || | |||||||| || |||| |
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| T |
58167 |
aggcagcaagttcaaaatggaaaactcatagtctctcacatctcttcaaagaatcaccttgcagacattctgactaagccattgcatcgcacaaggtttt |
58068 |
T |
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| Q |
318 |
caattctcagagacaaaattggtgtcattga |
348 |
Q |
| |
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|| |||||||||||||||| ||||||||||| |
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| T |
58067 |
cacttctcagagacaaaataggtgtcattga |
58037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 474
Target Start/End: Original strand, 7707475 - 7707534
Alignment:
| Q |
415 |
tttctgtctgccaaagttgttcgtgagcttcattctcctatgatttcttcgtaaaaatag |
474 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
7707475 |
tttctgtctaccaaagttgttcgtaagcttcattctcctatgatttcttagtaaaaatag |
7707534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 38569621 - 38569673
Alignment:
| Q |
152 |
tacttatgttccaatccggtatttcactctagaatgaagcatattgcacttga |
204 |
Q |
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| T |
38569621 |
tacttatgctctaatccagtttttcactctcgaatgaagcatatcgcacttga |
38569673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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