View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14904_high_7 (Length: 498)
Name: NF14904_high_7
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 12801177 - 12800877
Alignment:
| Q |
18 |
ctttggaggatcagataaattgactttggattttcttggtgttggaggaatggtgagaaatatgaatactacaagtggtggaggattttcacaaagagag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12801177 |
ctttggaggatcagataaattgactttggattttcttggtgttggaggaatggtgagaaatatgaatactacaagtggtggaggattttcacaaagagaa |
12801078 |
T |
|
| Q |
118 |
cagcaactacactccatgagtgcaatgaacaacatggatcctaaattggaatcaacacaaggaaatcaacctttttgaagatcaacaatggaaaaagctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12801077 |
cagcaactacactccatgagtgcaatgaacaacatggatcctaaattggaatcaacacaaggaaatcaacctttttgaagatcaacaatggaaaaagctg |
12800978 |
T |
|
| Q |
218 |
ttgggtgatgatataaattaaataggaagcnnnnnnnnntgtttatcaacattttacatgttctagtttatgacctcaaaaacaatgccctagttttaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12800977 |
ttgggtgatgatataaattaaataggaagcaaaaaaaaaagtttatcaacattttacatgttctagtttatgacctcaaaaacaatgccctagttttaaa |
12800878 |
T |
|
| Q |
318 |
c |
318 |
Q |
| |
|
| |
|
|
| T |
12800877 |
c |
12800877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 347 - 488
Target Start/End: Complemental strand, 12800850 - 12800708
Alignment:
| Q |
347 |
gtaattgacaattggtattttagtttatgaattctaaaatgtgcgatg-atgtgccatcaagacaggaaaaaccttcgagctcaatgaaacttacaaaaa |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12800850 |
gtaattgacaattggtattttagtttatgaattctaaaatgtgcaatgtatgtgccatcaagacatgaaaaaccttcgagctcaatgaaacttacaaaaa |
12800751 |
T |
|
| Q |
446 |
taattatatttacctcttgacaaggaaattaatcgagaatatt |
488 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
12800750 |
taattatatttacctcttgataaggaaattagtcgagaatatt |
12800708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 42289564 - 42289627
Alignment:
| Q |
19 |
tttggaggatcagataaattgactttggattttcttggtgttggaggaatggtgagaaatatga |
82 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42289564 |
tttggtggatctgataagttaactttagattttcttggtgttggaggaatggtcagaaatatga |
42289627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University