View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_high_8 (Length: 457)
Name: NF14904_high_8
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 446
Target Start/End: Original strand, 54940744 - 54941205
Alignment:
| Q |
7 |
tccaagaatatattatcatcactcctataatcttattaaaa-aatctgtgaatgttcaggaaaagtaaattaaaatttatcggtcttttaaaaggatctt |
105 |
Q |
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| T |
54940744 |
tccaaaaatatattatcatcactcctataatcttattaaaaaaatctgtgaatgttcaggaaaagtaaattaaaatttatcggtcttttaaaaggatctt |
54940843 |
T |
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| Q |
106 |
tcacaaagaccagaaagagtgtgaaccacaggaattacttgcaaactatacaattttttcaccatgttttaggacttatctttattgcgaataaaaacct |
205 |
Q |
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| T |
54940844 |
tcacaaagaccagaaagagtgtgaaccacaggaattacttgcaaactatacaattttttcaccatgttttaggacttatctttattgcgaataaaaacct |
54940943 |
T |
|
| Q |
206 |
aacctaaaaattgtgttacgaagaaaccaaacccctcaatcaagtt-ggggggagaattcttacttcactttccct-----------tttttctccaaaa |
293 |
Q |
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| T |
54940944 |
aacctaaaaattgtgttacgaagaaaccaaacccctcaatcaagttgggggggagaattcttacttcactttccctttcctctttcatttttctccaaaa |
54941043 |
T |
|
| Q |
294 |
gtctcgattcaaacacaccctgaataagttttaatagttcca---------aacaacataaaagttaaaactctaacaagcaaacttgtacagtctctag |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54941044 |
gtctcgattcaaacacaccctgaataagttttaatagttccaacattgaagaacaacataaaagttaaaactctaacaagcaaacttgtacagtctctag |
54941143 |
T |
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| Q |
385 |
caattcctgtcttatgtattagtcattagtcatataataatcttaaacatctatttagctat |
446 |
Q |
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| T |
54941144 |
caatttctgtcctatgtattagtcattagtcatataataatcttaaacatctatttagctat |
54941205 |
T |
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