View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_low_12 (Length: 405)
Name: NF14904_low_12
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 133 - 387
Target Start/End: Original strand, 52725318 - 52725573
Alignment:
| Q |
133 |
agtgtgatgctatattttttgtatttagtatttcgaaaattgcatattaagtgatatttgtgtcaaaaggagaggatggcgannnnnnn-attaatttac |
231 |
Q |
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| T |
52725318 |
agtgtgatgctatattttttgtatttagtatttcgaaaattgcatattaagtgatatttgtgtcaaaaggagaggatggcgattttttttattaatttac |
52725417 |
T |
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| Q |
232 |
aaaatagttgaattaaaatgtaatttatggtattaattaagttttgagaagagttgcttcgcttaagatgtttctattaaattccatatgatcaaaattg |
331 |
Q |
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| T |
52725418 |
aaaatagttgaattaaaatgtaatttatggtattaattaagttttgagaagagttgcttcgcttaagatgtttctattaaattccatatgatcaaaattg |
52725517 |
T |
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| Q |
332 |
agtcaaatgcatcattttccttactctcttcacaatttcttgttttttgacctatg |
387 |
Q |
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| T |
52725518 |
agtcaaatgcatcattttccttactctcttcacaatttcttgttttttgacctatg |
52725573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 52724401 - 52724522
Alignment:
| Q |
19 |
aataggtatccttactcataataataatattaacgttatttcacccaagcaaaacaaacgttcaaattgatacaccaatttgaataaaaacaagattaag |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52724401 |
aatacgtatccttactcataataataatattaacgttatttcacccaagcaaaacaaacgttcaaattgatacaccaatttgaataaaaacaagattaag |
52724500 |
T |
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| Q |
119 |
actcagctttgagcagtgtgat |
140 |
Q |
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| T |
52724501 |
actcagctttgagcagtgtgat |
52724522 |
T |
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