View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_low_23 (Length: 240)
Name: NF14904_low_23
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 51031009 - 51031228
Alignment:
| Q |
2 |
attattcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51031009 |
attattcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactg |
51031108 |
T |
|
| Q |
102 |
catgaacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccatttt |
201 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51031109 |
catgaacattggttcaaggttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccatttt |
51031208 |
T |
|
| Q |
202 |
gccaccacagagtttactcc |
221 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
51031209 |
gccaccacagagtttactcc |
51031228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 51063761 - 51063980
Alignment:
| Q |
2 |
attattcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactg |
101 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51063761 |
attattcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactg |
51063860 |
T |
|
| Q |
102 |
catgaacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccatttt |
201 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51063861 |
catgaacattggttcaaggttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccatttt |
51063960 |
T |
|
| Q |
202 |
gccaccacagagtttactcc |
221 |
Q |
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|||||||||||||||||||| |
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| T |
51063961 |
gccaccacagagtttactcc |
51063980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 40616990 - 40616774
Alignment:
| Q |
5 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
104 |
Q |
| |
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||||||||||| | ||||||||||||| |||||||| ||||||| ||||||| |||||| | ||| ||||| ||||||||||| |||||||| ||||| |
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| T |
40616990 |
attcaccttggcttgtaggagtccatgtaaaaaaccagtaaacacccttctcattacatggaagagctccagctctaaaacctttaccaaagtattgcat |
40616891 |
T |
|
| Q |
105 |
gaacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgcc |
204 |
Q |
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|||||||||||| || | ||| |||||| |||||| ||| || |||| |||||||||||||||||| || || |||||||| |||| ||| ||||| |
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| T |
40616890 |
gaacattggttccaactcatgattggtctcgcactctgaatagcccctggctgcatatctccctgtgtaagaggcctccttgaagcctagccactttgct |
40616791 |
T |
|
| Q |
205 |
accacagagtttactcc |
221 |
Q |
| |
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|||| |||||| ||||| |
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| T |
40616790 |
accaaagagttaactcc |
40616774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 51035253 - 51035469
Alignment:
| Q |
5 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
104 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
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| T |
51035253 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
51035352 |
T |
|
| Q |
105 |
gaacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgcc |
204 |
Q |
| |
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|||||||||||||| | ||||||| |||||||||| ||||||| || ||| |||| ||| | ||| || || |||||||| |||||||||||||| |
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| T |
51035353 |
gaacattggttcaagttcgtgagtgtccttcaactctacataacccctagttacataactctccacgtaagaggcctccttgaagcctaaccattttgct |
51035452 |
T |
|
| Q |
205 |
accacagagtttactcc |
221 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
51035453 |
accacagagtttactcc |
51035469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 51069240 - 51069434
Alignment:
| Q |
21 |
aggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaag |
120 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||| ||| || | | | ||||| ||||||||||||||| || ||||||| | ||| || ||||| |
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| T |
51069240 |
aggagtccaagtgaaaaaccagtaaacacctttctcatgacaaggaacaactccagctctaaaacctttgccatagaactgcataagcataggctcaaaa |
51069339 |
T |
|
| Q |
121 |
ttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgccaccacagagtt |
215 |
Q |
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||||| || | | ||||||||| |||| ||| || ||||||||||||| || || |||||||| |||||||| ||||| ||||||||||| |
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| T |
51069340 |
ctgtgattgttttccaactctgcgaaacccctgattccatatctccctgtataactggcctccttgaagcctaaccactttgcaaccacagagtt |
51069434 |
T |
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