View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14904_low_27 (Length: 219)
Name: NF14904_low_27
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_low_27 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 40569181 - 40569382
Alignment:
| Q |
18 |
ttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatattagtattcaggattagatgttaatctatcttcat |
117 |
Q |
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| T |
40569181 |
ttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattggttgatattagtattcaggattagatgtgaatctatcttcat |
40569280 |
T |
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| Q |
118 |
tataatagtgttgtcgtatatgttctatttccccctgtattggtctattgtacatgatattcatatttgtatcgatgtaaatataggatttgcaattgag |
217 |
Q |
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| T |
40569281 |
tataatagtgttgtcgtatatgttgtattttcccctgtattggtctattgcacatgatattcatatttgtatcgatgtaaaaataggatttgcaattgag |
40569380 |
T |
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| Q |
218 |
tt |
219 |
Q |
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|| |
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| T |
40569381 |
tt |
40569382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 40573785 - 40573972
Alignment:
| Q |
21 |
tgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatattagtattcaggattagatgttaatctatcttcattat |
120 |
Q |
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| T |
40573785 |
tgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatattaatattcaggattagatgttaatatatcttcagtat |
40573884 |
T |
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| Q |
121 |
aatagtgttgtcgtatatgttctatttccccctgtattggtctattgtacatgatattcatatttgtatcgatgtaaatataggattt |
208 |
Q |
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| T |
40573885 |
aatagtgttgtcgtatatgttgtatttccccctgtattagtccattggacatgatatttatatttgtctcgatgtaaatatgggattt |
40573972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 40580246 - 40580357
Alignment:
| Q |
25 |
tcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatat---tagtattcaggattagatgttaatctatcttcattata |
121 |
Q |
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| T |
40580246 |
tcatatagcttaaaccagatttcgat---atcgattggtggaagatgattgatggatattaataatactcatggttatatgttaatctatcttcactata |
40580342 |
T |
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| Q |
122 |
atagtgttgtcgtat |
136 |
Q |
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| T |
40580343 |
attgtgttgtagtat |
40580357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 40602718 - 40602775
Alignment:
| Q |
25 |
tcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgata |
82 |
Q |
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| T |
40602718 |
tcatgtagcttaaagcagattaggatatcattgattggtggaatatgattagttgata |
40602775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 2014567 - 2014505
Alignment:
| Q |
18 |
ttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttga |
80 |
Q |
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| T |
2014567 |
ttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
2014505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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