View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14904_low_3 (Length: 666)

Name: NF14904_low_3
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14904_low_3
NF14904_low_3
[»] chr5 (36 HSPs)
chr5 (15-477)||(43025064-43025526)
chr5 (308-477)||(35064091-35064270)
chr5 (376-477)||(42815210-42815311)
chr5 (478-662)||(39434676-39434866)
chr5 (478-662)||(26283315-26283505)
chr5 (477-662)||(36293618-36293809)
chr5 (481-662)||(10033910-10034097)
chr5 (481-662)||(13817960-13818147)
chr5 (124-218)||(35063718-35063813)
chr5 (588-662)||(16155093-16155167)
chr5 (482-658)||(1776377-1776559)
chr5 (584-662)||(12278857-12278935)
chr5 (584-662)||(16333873-16333951)
chr5 (584-662)||(39657503-39657581)
chr5 (584-662)||(17332548-17332626)
chr5 (584-662)||(31680459-31680537)
chr5 (584-662)||(33430413-33430491)
chr5 (584-659)||(19986031-19986106)
chr5 (224-274)||(35063853-35063903)
chr5 (584-662)||(37254733-37254811)
chr5 (584-662)||(43068969-43069047)
chr5 (584-643)||(3155647-3155706)
chr5 (123-177)||(42814804-42814859)
chr5 (584-647)||(31501728-31501791)
chr5 (499-538)||(31680368-31680407)
chr5 (584-662)||(36291463-36291541)
chr5 (478-539)||(3155757-3155818)
chr5 (499-539)||(17332677-17332717)
chr5 (225-271)||(42815062-42815109)
chr5 (477-539)||(39657632-39657694)
chr5 (26-60)||(42814713-42814747)
chr5 (481-534)||(14316641-14316694)
chr5 (625-662)||(28801439-28801476)
chr5 (499-539)||(12278986-12279026)
chr5 (499-527)||(26543903-26543931)
chr5 (499-539)||(31501842-31501882)
[»] chr2 (24 HSPs)
chr2 (478-662)||(41251631-41251821)
chr2 (478-662)||(17445038-17445226)
chr2 (477-662)||(6403801-6403992)
chr2 (478-662)||(42439966-42440156)
chr2 (478-662)||(18981597-18981786)
chr2 (584-662)||(31581619-31581697)
chr2 (478-662)||(35962695-35962885)
chr2 (477-662)||(32127138-32127329)
chr2 (584-662)||(16405692-16405770)
chr2 (584-662)||(45418675-45418753)
chr2 (584-648)||(2285954-2286018)
chr2 (478-537)||(2958228-2958287)
chr2 (584-662)||(12756834-12756912)
chr2 (584-662)||(44084600-44084678)
chr2 (584-658)||(771091-771165)
chr2 (499-539)||(45418584-45418624)
chr2 (584-658)||(8147443-8147518)
chr2 (477-539)||(16405579-16405641)
chr2 (499-539)||(8147352-8147392)
chr2 (499-539)||(44084729-44084769)
chr2 (499-537)||(26237958-26237996)
chr2 (584-629)||(2958131-2958176)
chr2 (584-662)||(26162699-26162774)
chr2 (499-527)||(34523241-34523269)
[»] chr3 (25 HSPs)
chr3 (478-662)||(22968441-22968631)
chr3 (478-658)||(6269427-6269613)
chr3 (478-662)||(19390126-19390316)
chr3 (478-662)||(39771770-39771960)
chr3 (482-662)||(34084119-34084305)
chr3 (584-662)||(45183073-45183151)
chr3 (588-662)||(6930891-6930965)
chr3 (584-662)||(11018209-11018287)
chr3 (584-662)||(27935270-27935348)
chr3 (597-662)||(33041058-33041123)
chr3 (586-662)||(45335968-45336044)
chr3 (584-662)||(40081738-40081815)
chr3 (589-662)||(6503566-6503639)
chr3 (499-539)||(33040954-33040994)
chr3 (499-539)||(45182982-45183022)
chr3 (612-662)||(22922215-22922265)
chr3 (612-662)||(35514382-35514432)
chr3 (478-539)||(6503695-6503756)
chr3 (499-539)||(6931020-6931060)
chr3 (584-643)||(19565517-19565576)
chr3 (477-539)||(11018338-11018400)
chr3 (625-662)||(5135421-5135458)
chr3 (482-539)||(22922141-22922198)
chr3 (499-527)||(5354710-5354738)
chr3 (499-535)||(6890999-6891035)
[»] chr7 (19 HSPs)
chr7 (478-662)||(14777104-14777294)
chr7 (482-662)||(8394109-8394295)
chr7 (478-662)||(5555467-5555657)
chr7 (482-662)||(36630800-36630986)
chr7 (477-662)||(3114093-3114284)
chr7 (584-662)||(37002141-37002219)
chr7 (584-662)||(26624838-26624916)
chr7 (584-662)||(36658273-36658351)
chr7 (584-662)||(7002817-7002895)
chr7 (584-662)||(7048688-7048766)
chr7 (584-662)||(35090260-35090338)
chr7 (584-658)||(38638237-38638311)
chr7 (584-662)||(40920000-40920078)
chr7 (584-662)||(43184465-43184543)
chr7 (584-662)||(8867728-8867806)
chr7 (584-662)||(34389053-34389131)
chr7 (499-539)||(8867857-8867897)
chr7 (499-539)||(34389182-34389222)
chr7 (584-648)||(33685656-33685720)
[»] chr4 (41 HSPs)
chr4 (478-662)||(20129290-20129480)
chr4 (478-662)||(26439276-26439466)
chr4 (478-662)||(34407281-34407471)
chr4 (478-662)||(47500753-47500943)
chr4 (477-662)||(13012167-13012358)
chr4 (478-662)||(43355884-43356074)
chr4 (478-662)||(25930688-25930878)
chr4 (482-662)||(36382343-36382528)
chr4 (584-662)||(6235612-6235690)
chr4 (584-662)||(3292893-3292971)
chr4 (584-662)||(13392878-13392956)
chr4 (584-662)||(13396017-13396095)
chr4 (584-662)||(28877247-28877325)
chr4 (584-662)||(30216739-30216817)
chr4 (584-662)||(40529107-40529185)
chr4 (584-662)||(48989420-48989498)
chr4 (585-662)||(50205074-50205151)
chr4 (584-662)||(1817809-1817887)
chr4 (478-662)||(29319702-29319892)
chr4 (584-662)||(42333773-42333851)
chr4 (584-662)||(43143581-43143659)
chr4 (584-662)||(44156743-44156821)
chr4 (584-662)||(6690232-6690310)
chr4 (584-662)||(35546045-35546123)
chr4 (499-539)||(6690361-6690401)
chr4 (499-539)||(30216868-30216908)
chr4 (584-662)||(17511230-17511309)
chr4 (500-539)||(43143710-43143749)
chr4 (501-539)||(3293022-3293060)
chr4 (477-539)||(7769307-7769369)
chr4 (584-662)||(10352881-10352959)
chr4 (584-660)||(29995982-29996058)
chr4 (499-535)||(49908782-49908818)
chr4 (584-646)||(26448144-26448206)
chr4 (481-527)||(27363344-27363390)
chr4 (612-662)||(30077628-30077678)
chr4 (625-662)||(30110108-30110145)
chr4 (625-662)||(48130111-48130148)
chr4 (499-535)||(5517494-5517530)
chr4 (499-539)||(10353010-10353050)
chr4 (499-539)||(50205203-50205243)
[»] scaffold0069 (1 HSPs)
scaffold0069 (477-662)||(17821-18012)
[»] scaffold0002 (1 HSPs)
scaffold0002 (478-662)||(480454-480644)
[»] chr6 (11 HSPs)
chr6 (478-662)||(398597-398787)
chr6 (584-662)||(13837913-13837991)
chr6 (584-662)||(18339198-18339276)
chr6 (584-662)||(28996822-28996900)
chr6 (478-662)||(34948755-34948945)
chr6 (584-662)||(29743375-29743453)
chr6 (584-662)||(33229333-33229411)
chr6 (478-539)||(13837801-13837862)
chr6 (499-539)||(18339107-18339147)
chr6 (499-539)||(28996731-28996771)
chr6 (499-534)||(13647018-13647053)
[»] chr1 (15 HSPs)
chr1 (478-662)||(26144235-26144425)
chr1 (478-662)||(7433425-7433615)
chr1 (584-662)||(32982053-32982131)
chr1 (584-662)||(3829076-3829153)
chr1 (584-658)||(17445405-17445479)
chr1 (584-662)||(42310938-42311016)
chr1 (584-662)||(321374-321452)
chr1 (584-662)||(35907644-35907722)
chr1 (478-536)||(23313218-23313276)
chr1 (485-539)||(32982182-32982236)
chr1 (481-539)||(42311067-42311125)
chr1 (475-539)||(41972401-41972464)
chr1 (625-662)||(33489839-33489876)
chr1 (625-662)||(41972253-41972290)
chr1 (499-539)||(35907553-35907593)
[»] scaffold2142 (1 HSPs)
scaffold2142 (477-662)||(501-692)
[»] chr8 (18 HSPs)
chr8 (478-662)||(39914495-39914684)
chr8 (482-648)||(15838270-15838441)
chr8 (471-662)||(29728383-29728580)
chr8 (584-662)||(16788022-16788100)
chr8 (584-660)||(3648793-3648869)
chr8 (584-662)||(4404100-4404178)
chr8 (584-662)||(9877312-9877390)
chr8 (584-662)||(23402200-23402278)
chr8 (584-662)||(34136822-34136900)
chr8 (584-660)||(42231029-42231105)
chr8 (477-539)||(34136951-34137013)
chr8 (502-539)||(16788151-16788188)
chr8 (499-539)||(4404009-4404049)
chr8 (499-539)||(36408552-36408592)
chr8 (499-538)||(2729323-2729362)
chr8 (499-534)||(23402109-23402144)
chr8 (481-538)||(3648921-3648978)
chr8 (625-662)||(40470472-40470509)
[»] scaffold0502 (2 HSPs)
scaffold0502 (584-662)||(5322-5400)
scaffold0502 (499-539)||(5231-5271)
[»] scaffold0041 (1 HSPs)
scaffold0041 (584-662)||(53017-53095)
[»] scaffold0154 (2 HSPs)
scaffold0154 (584-662)||(31572-31650)
scaffold0154 (499-539)||(31481-31521)
[»] scaffold0769 (1 HSPs)
scaffold0769 (499-527)||(1278-1306)
[»] scaffold0012 (1 HSPs)
scaffold0012 (499-527)||(194029-194057)


Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Original strand, 43025064 - 43025526
Alignment:
Q  15 actctcttctgtcaccgtatgatttgaaaattttaattatgttgaattaaatatcaaccatgaaatacatataatatgcatgagcacgatattgcaaaga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025064 actctcttctgtcaccgtatgatttgaaaattttaattatgttgaactaaatatcaaccatgaaatacatataatatgcatgagcacgatattgcaaaga 43025163  T
Q  115 cgaacactcagaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtcactacgctatctgacaccgattacattcgattaattc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025164 cgaacactcagaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtcactacgctatctgacaccgattacattcgattaattc 43025263  T
Q  215 attttctctcaacttaaaactcagtttacaatcaagcatcaaatataaaccctaatcgagtcgattaattcattttctcnnnnnnntattaagaacccta 314  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  43025264 atgttctctcaacttaaaactcagtttacaatcaagcatcaaatataaaccctaatcgagtcgattaattcattttctcaaaaaaatattaagaacccta 43025363  T
Q  315 atcaagaaaatcaataaatcctagtacagtaacgatgaaaacagttaaaaacgatcaagattaagaaccgaccttcattggtctgagcgttggtgaccag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025364 atcaagaaaatcaataaatcctagtacagtaacgatgaaaacagttaaaaacgatcaagattaagaaccgaccttcattggtctgagcgttggtgaccag 43025463  T
Q  415 aaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 477  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025464 aaggtcaaaatcagtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 43025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 308 - 477
Target Start/End: Original strand, 35064091 - 35064270
Alignment:
Q  308 aaccctaatcaagaaaatcaataaatcctagtaca-----gtaacgatgaaaacagttaa-----aaacgatcaagattaagaaccgaccttcattggtc 397  Q
    ||||||||||||||||||||||||||||||||| |     |||| |||||||||||||||     |||||||| ||||||||||||||||||||||||||    
T  35064091 aaccctaatcaagaaaatcaataaatcctagtatacaaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtc 35064190  T
Q  398 tgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 477  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35064191 tgagcgttagtaaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtacc 35064270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 376 - 477
Target Start/End: Original strand, 42815210 - 42815311
Alignment:
Q  376 taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgta 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42815210 taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcagtaccccttcctaaatgcttggatacaaatatactttgtttcaatgta 42815309  T
Q  476 cc 477  Q
    ||    
T  42815310 cc 42815311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 39434676 - 39434866
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||        ||||||||||||||| || |||||||||||     
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagccc-attaacacattt 39434774  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39434775 acaaaatgaaaaa-tttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctctct 39434866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 26283505 - 26283315
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||        |||||||| |||||| | |||||||||||     
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttc-attaacacattt 26283407  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26283406 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 26283315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 477 - 662
Target Start/End: Complemental strand, 36293809 - 36293618
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 568  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||| |||||| |||||||||||        |||||||||||||| || |||||||||||    
T  36293809 ccatgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagccc-attaacacatt 36293711  T
Q  569 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
     ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36293710 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagtttcatctctct 36293618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 481 - 662
Target Start/End: Original strand, 10033910 - 10034097
Alignment:
Q  481 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacn 572  Q
    ||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||        |||||||||||||| || ||||||||||| ||     
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatttaca 10034008  T
Q  573 nnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
               |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  10034009 aaaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 10034097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 481 - 662
Target Start/End: Original strand, 13817960 - 13818147
Alignment:
Q  481 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacn 572  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||| |||||||||||        |||||||||||||| || ||||||||||| ||     
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatttaca 13818058  T
Q  573 nnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
               |||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||| |  ||||||||||    
T  13818059 aaaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctctct 13818147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 35063718 - 35063813
Alignment:
Q  124 agaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtc-actacgctatctgacaccgattacattcgattaattcattt 218  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||    
T  35063718 agaacacccagaacatctatagcacagacacctctaatcaaaggtgacagtgtctactacactatctgacacggattatattcggttaattcattt 35063813  T

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Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 588 - 662
Target Start/End: Original strand, 16155093 - 16155167
Alignment:
Q  588 ggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16155093 ggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacagattcatctctct 16155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 482 - 658
Target Start/End: Complemental strand, 1776559 - 1776377
Alignment:
Q  482 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 573  Q
    |||||||||||||| |  |||||||||||||||||||||||||||| |||||||||||        | |||||| |||||||| ||||||||||| ||      
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtcc-attaacacatttacaa 1776461  T
Q  574 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 658  Q
              |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  1776460 aaagaaaaa-tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

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Target: chr5; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 12278935 - 12278857
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  12278935 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctctct 12278857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 16333951 - 16333873
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  16333951 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacggattcatgtctct 16333873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 39657581 - 39657503
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  39657581 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 39657503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 17332626 - 17332548
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  17332626 tttgggcaatctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctctct 17332548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 31680459 - 31680537
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  31680459 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 31680537  T

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Target: chr5; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 33430413 - 33430491
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  33430413 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 33430491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 584 - 659
Target Start/End: Original strand, 19986031 - 19986106
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctc 659  Q
    |||||| |||||||||||| ||||| | |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  19986031 tttgggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

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Target: chr5; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 35063853 - 35063903
Alignment:
Q  224 caacttaaaactcagtttacaatcaagcatcaaatataaaccctaatcgag 274  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35063853 caacttaaaactcagtttacaatcaagcatcagatataaaccctaatcgag 35063903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 37254733 - 37254811
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||| ||||||| | |||||||||||    
T  37254733 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctctct 37254811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 43068969 - 43069047
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| | ||| ||||||| |||| |||||||||||||||||||||||| | | |||||||||||    
T  43068969 tttgggcaatctgaaaattcttacatgtaaataagtctcggaattttatttagcacactattgccggattcatctctct 43069047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 643
Target Start/End: Complemental strand, 3155706 - 3155647
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacacta 643  Q
    ||||| |||||| |||||||||||| | |||||| |||||||||||||||||||||||||    
T  3155706 tttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 42814804 - 42814859
Alignment:
Q  123 cagaacactcagaacttctataggacagaca-cctctaatcaaaggtgacagtgtc 177  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||    
T  42814804 cagaacactcagaacttctatagcacagacaccctctaatcaaaggtgccagtgtc 42814859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 647
Target Start/End: Complemental strand, 31501791 - 31501728
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattga 647  Q
    |||||||||||| |||||| || || | |||||||||| | |||||||||||||||||||||||    
T  31501791 tttgggcaatctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 538
Target Start/End: Original strand, 31680368 - 31680407
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataattttt 538  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  31680368 gcgaccccgggcggtcgcccgggctcgatcgataattttt 31680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 36291463 - 36291541
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| | |||   ||||||||||  |||||||||||| |||||||||||| | |||||||||||    
T  36291463 tttgggcaatctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctctct 36291541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 3155818 - 3155757
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||||| ||| | |||| ||||||||||||| ||||||||||  ||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttg 3155757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 17332717 - 17332677
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  17332717 gcgaccccgggcgttcgcccgggctcgatcgataatttttg 17332677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 42815062 - 42815109
Alignment:
Q  225 aacttaaaactcagtttacaa-tcaagcatcaaatataaaccctaatc 271  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  42815062 aacttaaaacttagtttacaaattaagcatcaaatataaaccctaatc 42815109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 539
Target Start/End: Complemental strand, 39657694 - 39657632
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||  | | |||||||| | ||||||  ||||||||||||||||||||||    
T  39657694 ccatgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttg 39657632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 42814713 - 42814747
Alignment:
Q  26 tcaccgtatgatttgaaaattttaattatgttgaa 60  Q
    |||| ||||||||||||||||||||||||||||||    
T  42814713 tcacagtatgatttgaaaattttaattatgttgaa 42814747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 534
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  481 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataat 534  Q
    ||||||||||||||| | |||| | ||||||||||||| |||||||| ||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 28801439 - 28801476
Alignment:
Q  625 aattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  28801439 aattttatttagctcactattgacaggttcatctctct 28801476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 12279026 - 12278986
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  12279026 gcgatcccgggcggtcgcccggactcgatcgataatttttg 12278986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 527
Target Start/End: Complemental strand, 26543931 - 26543903
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgat 527  Q
    |||||||||||||||||||||||||||||    
T  26543931 gcgaccccgggcggtcgcccgggctcgat 26543903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 31501882 - 31501842
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||| | ||||||||||||| |||||||||||    
T  31501882 gcgaccccgggcgattgcccgggctcgatcgataatttttg 31501842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 41251821 - 41251631
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||        |||||||||||||| || |||||||||||     
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 41251723  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41251722 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 41251631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 17445226 - 17445038
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg------actcaacccaaaagtcctattaacacattcac 571  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||      |||||||||||||| || ||||||||||| ||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcactagactcaacccaaaagccc-attaacacatttac 17445128  T
Q  572 nnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
                |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17445127 aaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 17445038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 477 - 662
Target Start/End: Complemental strand, 6403992 - 6403801
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 568  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||| | |||||||||||    
T  6403992 ccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttc-attaacacatt 6403894  T
Q  569 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
     |             |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6403893 ta-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 6403801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 42439966 - 42440156
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||        ||| |||||||||| || |||||||||||     
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagccc-attaacacattt 42440064  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||| | ||||| |||||    
T  42440065 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcatgtctct 42440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 18981597 - 18981786
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||        ||||||||||||||||| ||||| |||||     
T  18981597 catgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtcc-attaaaacattt 18981694  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||| | ||||| |||||    
T  18981695 acaaaaagaaaaa-tttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgggttcatgtctct 18981786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 31581697 - 31581619
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  31581697 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 31581619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 35962695 - 35962885
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||||||        |||||||||||||| | ||||||||||||     
T  35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaag-cttattaacacattt 35962793  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  35962794 acaaaaagaaaat-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 35962885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 477 - 662
Target Start/End: Complemental strand, 32127329 - 32127138
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 568  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||  ||||||||||        |||| |||||||||  | |||||||||||    
T  32127329 ccatgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctc-attaacacatt 32127231  T
Q  569 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
     ||            ||| |||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||| | ||||| |||||    
T  32127230 tacaaaaagaaaaa-tttaggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcatgtctct 32127138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 16405692 - 16405770
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| |||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||| | ||||| |||||    
T  16405692 tttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcatgtctct 16405770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 45418675 - 45418753
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  45418675 tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctctct 45418753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 584 - 648
Target Start/End: Original strand, 2285954 - 2286018
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgac 648  Q
    |||| ||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  2285954 tttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgac 2286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 2958287 - 2958228
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttt 537  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt 2958228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 12756912 - 12756834
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||| ||||||| |||||| ||||| | ||||| |||| |||||||||||||||||||||||||| | |||||||||||    
T  12756912 tttgagcaatctgaaaattctcacacgcaaataagtctcggaattttatttagcacactattgacgggttcatctctct 12756834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 44084678 - 44084600
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||| | | ||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  44084678 tttgggcaatctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctctct 44084600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 658
Target Start/End: Original strand, 771091 - 771165
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 658  Q
    |||||||||||| |||||| ||||| | |||||||||| |||| ||||||||||||| ||||||| | |||||||    
T  771091 tttgggcaatctgaaaattctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 45418584 - 45418624
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  45418584 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 45418624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 658
Target Start/End: Original strand, 8147443 - 8147518
Alignment:
Q  584 tttgggcaatct-aaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 658  Q
    |||||||||||| ||||||| ||||| | |||||| ||| ||||||||||||| |||||||||||| | |||||||    
T  8147443 tttgggcaatctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 539
Target Start/End: Original strand, 16405579 - 16405641
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||| | | | ||||| |||||||||||||||||| || |||||||||||    
T  16405579 ccatgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttg 16405641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 8147352 - 8147392
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  8147352 gcgaccccgggcggtcgcccgggctcgatcgataatctttg 8147392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 44084769 - 44084729
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  44084769 gcgaccccgggcagtcgcccgggctcgatcgataatttttg 44084729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 26237958 - 26237996
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttt 537  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  26237958 gcgaccccgggcggtcgcccgggctcgatcgatattttt 26237996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 2958176 - 2958131
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattt 629  Q
    |||||| ||||| |||||||||||| | ||||||||||||||||||    
T  2958176 tttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 26162774 - 26162699
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||||||||||||||| ||| |   |||||||||| |||   |||||||||||| ||||||| | |||||||||||    
T  26162774 tttgggcaatctaaaaattctcaaacacaaataggtctcgga---ttatttagcacattattgacgggttcatctctct 26162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 527
Target Start/End: Original strand, 34523241 - 34523269
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgat 527  Q
    |||||||||||||||||||||||||||||    
T  34523241 gcgaccccgggcggtcgcccgggctcgat 34523269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 22968631 - 22968441
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||        ||| |||||||||| || |||||||||||     
T  22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagccc-attaacacattt 22968533  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22968532 acaaaaagaaaaa-tttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctctct 22968441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 478 - 658
Target Start/End: Complemental strand, 6269613 - 6269427
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    ||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||        |||||||||||||| || |||||||||||     
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 6269515  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 658  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6269514 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 19390126 - 19390316
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||        |||||||| ||||||| ||||||||||||     
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtc-tattaacacattt 19390224  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19390225 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 19390316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 39771770 - 39771960
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 39771868  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  39771869 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 39771960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 482 - 662
Target Start/End: Complemental strand, 34084305 - 34084119
Alignment:
Q  482 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 573  Q
    |||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||        | |||||| |||||||| ||||||||||| ||      
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtcc-attaacacatttacaa 34084207  T
Q  574 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
              |||||||||| | |||||| ||||| | ||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  34084206 aaagaaaaa-tttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctctct 34084119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 45183073 - 45183151
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| |||||   |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  45183073 tttgggcaatctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctctct 45183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 588 - 662
Target Start/End: Complemental strand, 6930965 - 6930891
Alignment:
Q  588 ggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||   |||||||||||    
T  6930965 ggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctctct 6930891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 11018287 - 11018209
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | ||||||||||  |||||||||||||||||| |||||| | |||||||||||    
T  11018287 tttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctctct 11018209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 27935270 - 27935348
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||| | | |||||||||| |||||||||||||||| ||||||||| | |||||||||||    
T  27935270 tttgggcaatctgaaaattctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctctct 27935348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 662
Target Start/End: Original strand, 33041058 - 33041123
Alignment:
Q  597 aaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  33041058 aaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 33041123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 586 - 662
Target Start/End: Original strand, 45335968 - 45336044
Alignment:
Q  586 tgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||| |||||| | ||| | |||||||||||||||||||||||||||||||| || | | |||||||||||    
T  45335968 tgggcaatctgaaaattcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctctct 45336044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 40081815 - 40081738
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||| | |||||||||||| | |||||| ||||||| |||| ||||||||||||||||| | |||||||||||    
T  40081815 tttgggcaatttgaaaattgtcacacgcaaatagatcttggattttt-tttagcacactattgacgggttcatctctct 40081738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 662
Target Start/End: Complemental strand, 6503639 - 6503566
Alignment:
Q  589 gcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||| |||||| ||||||| |||||||||| ||| ||||||||||||||| |||||  | |||||||||||    
T  6503639 gcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctctct 6503566  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 33040954 - 33040994
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  33040954 gcgaccccgggcggtcgctcgggctcgattgataatttttg 33040994  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 45182982 - 45183022
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  45182982 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 45183022  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 612 - 662
Target Start/End: Original strand, 22922215 - 22922265
Alignment:
Q  612 aaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||| ||||||||||||||||| |||||||||||| | |||||||||||    
T  22922215 aaatagatcttggaattttatttaacacactattgacgggttcatctctct 22922265  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 612 - 662
Target Start/End: Original strand, 35514382 - 35514432
Alignment:
Q  612 aaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  35514382 aaataggtctaggaattttattttgcacactattgacgggttcatctctct 35514432  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 6503756 - 6503695
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||  |||||   ||||||||||||||||||||||||||||| ||| |||||||    
T  6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttg 6503695  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 6931060 - 6931020
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  6931060 gcgaccccggacggtcgcccgggctcgatcgataatttttg 6931020  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 643
Target Start/End: Complemental strand, 19565576 - 19565517
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacacta 643  Q
    ||||| |||||| |||||| | ||| | |||||||||| |||||||||||||||||||||    
T  19565576 tttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 539
Target Start/End: Complemental strand, 11018400 - 11018338
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||  |||||   ||||| |||||||||||||| |||||||| |||||||||||    
T  11018400 ccatgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttg 11018338  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 5135421 - 5135458
Alignment:
Q  625 aattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||||||||||||||| | |||||||||||    
T  5135421 aattttatttagcacactattgacgggttcatctctct 5135458  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 539
Target Start/End: Original strand, 22922141 - 22922198
Alignment:
Q  482 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||| ||||| | |||| ||||||||||||| |||||||||| ||| |||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttg 22922198  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 527
Target Start/End: Original strand, 5354710 - 5354738
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgat 527  Q
    |||||||||||||||||||||||||||||    
T  5354710 gcgaccccgggcggtcgcccgggctcgat 5354738  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 535
Target Start/End: Original strand, 6890999 - 6891035
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatt 535  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  6890999 gcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

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Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 14777294 - 14777104
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||        ||||||||||||||  | |||||||||||     
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctc-attaacacattt 14777196  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14777195 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatcgctct 14777104  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 482 - 662
Target Start/End: Original strand, 8394109 - 8394295
Alignment:
Q  482 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 573  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||||| ||||||||||| ||      
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 8394207  T
Q  574 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
              |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||    
T  8394208 aaggaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctctct 8394295  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 5555467 - 5555657
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||        |||||||||||||| || |||||| ||||     
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacgcattt 5555565  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  5555566 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 5555657  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 482 - 662
Target Start/End: Original strand, 36630800 - 36630986
Alignment:
Q  482 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 573  Q
    |||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||        |||||||| |||||||| ||||||||||| ||      
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 36630898  T
Q  574 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
              |||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  36630899 aaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctctct 36630986  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 477 - 662
Target Start/End: Complemental strand, 3114284 - 3114093
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 568  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||||| |||||||||||        |||||||||||||| || |||||||||||    
T  3114284 ccatgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatt 3114186  T
Q  569 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
     ||            |||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  3114185 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 3114093  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 37002219 - 37002141
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  37002219 tttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 37002141  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 26624838 - 26624916
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  26624838 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 26624916  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 36658273 - 36658351
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  36658273 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 36658351  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 7002817 - 7002895
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| ||||||||||||| ||||| | |||||||||  |||||||||||||||||||||||||| | |||||||||||    
T  7002817 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctctct 7002895  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 7048688 - 7048766
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| ||||||||||||| ||||| | |||||||||  |||||||||||||||||||||||||| | |||||||||||    
T  7048688 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctctct 7048766  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 35090260 - 35090338
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||| ||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  35090260 tttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctctct 35090338  T

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Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 658
Target Start/End: Complemental strand, 38638311 - 38638237
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 658  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||    
T  38638311 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

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Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 40920078 - 40920000
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| |||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  40920078 tttggacaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 40920000  T

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Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 43184543 - 43184465
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  43184543 tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctctct 43184465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 8867806 - 8867728
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||  |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||| ||||    
T  8867806 tttgggcaatcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatcactct 8867728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 34389131 - 34389053
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||| ||| ||| | |||||||||||    
T  34389131 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctctct 34389053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 8867897 - 8867857
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  8867897 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 8867857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 34389222 - 34389182
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  34389222 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 34389182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 648
Target Start/End: Original strand, 33685656 - 33685720
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgac 648  Q
    |||||||||||| |||||| ||| | | ||||| ||||   ||||||||||||||||||||||||    
T  33685656 tttgggcaatctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgac 33685720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 20129290 - 20129480
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||| || |||||||||||     
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 20129388  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  20129389 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctctct 20129480  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 26439466 - 26439276
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 26439368  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  26439367 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 26439276  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 34407471 - 34407281
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 34407373  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  34407372 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 34407281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 47500753 - 47500943
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 47500851  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47500852 a-tgaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 47500943  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 477 - 662
Target Start/End: Original strand, 13012167 - 13012358
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 568  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        | |||||| |||||  | |||||||||||    
T  13012167 ccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctc-attaacacatt 13012265  T
Q  569 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
     |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13012266 ta-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 13012358  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 43355884 - 43356074
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 43355982  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  43355983 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 43356074  T

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Target: chr4; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 25930688 - 25930878
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||  ||||||||||        |||||||||||||| || |||||||||||     
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagccc-attaacacattt 25930786  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  25930787 acaaaaagaaaaa-tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 25930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 482 - 662
Target Start/End: Complemental strand, 36382528 - 36382343
Alignment:
Q  482 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 573  Q
    |||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||        |||||||| |||||||| ||||||||||| ||      
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 36382430  T
Q  574 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
              ||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  36382429 aagaaaaa--tttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 36382343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 6235612 - 6235690
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  6235612 tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 6235690  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 3292971 - 3292893
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||   |||||||||||    
T  3292971 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctctct 3292893  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 13392956 - 13392878
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||||||||||||||| ||||| | |||||||||| | |||||||||||||||||||||||  | |||||||||||    
T  13392956 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctct 13392878  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 13396095 - 13396017
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||||||||||||||| ||||| | |||||||||| | |||||||||||||||||||||||  | |||||||||||    
T  13396095 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctct 13396017  T

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Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 28877325 - 28877247
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||| |||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||  | |||||||||||    
T  28877325 tttgggaaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacactattgatgggttcatctctct 28877247  T

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Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 30216817 - 30216739
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||| ||| |||||||||||||||||||||||||| | |||||||||||    
T  30216817 tttgggcaatctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctctct 30216739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 40529107 - 40529185
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  40529107 tttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgacgggttcatatctct 40529185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 48989420 - 48989498
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||| | | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  48989420 tttgggcaatctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 48989498  T

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Target: chr4; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 585 - 662
Target Start/End: Complemental strand, 50205151 - 50205074
Alignment:
Q  585 ttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||| |||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  50205151 ttggacaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatcactct 50205074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 1817809 - 1817887
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||||||||||||||| | ||| | |||||||||| ||||||||||||| |||||||||| | | |||||||||||    
T  1817809 tttgggcaatctaaaaattcttacacgcaaataggtctcggaattttatttaacacactattgtcggattcatctctct 1817887  T

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Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 29319892 - 29319702
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | | |||||| |||||||| || |||||||| ||||||||||        |||||||||||||| ||| |||||||||||     
T  29319892 catgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaa-tcccattaacacattt 29319794  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||| ||||||| ||||||||||||   ||||| ||||||||||||||||||||||||||||||| | ||||| |||||    
T  29319793 ac-aaaaagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgggttcatgtctct 29319702  T

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Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 42333851 - 42333773
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| ||||| |  |||||||||||    
T  42333851 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgataagttcatctctct 42333773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 43143659 - 43143581
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| |||||  | |||||||||||    
T  43143659 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctct 43143581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 44156743 - 44156821
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| |||||| |||||| || || | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  44156743 tttggacaatctgaaaattctctcacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 44156821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 6690310 - 6690232
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||||| || |||||| ||||| | |||||||||| | |||||||||||||||||||||||| | ||| |||||||    
T  6690310 tttgggcaaactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctctct 6690232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 35546045 - 35546123
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||| |||||  ||||||||||||||||||||||||  | |||||||||||    
T  35546045 tttgggcaatctgaaaattctcacacgcaaatgggtctctgaattttatttagcacactattgatgggttcatctctct 35546123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 6690401 - 6690361
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  6690401 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 6690361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 30216908 - 30216868
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  30216908 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 30216868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 17511309 - 17511230
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttgg-aattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||| | |||||||| ||| | ||||||||||||| |||||||||||||||| ||||||  | |||||||||||    
T  17511309 tttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattgatcggttcatctctct 17511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 539
Target Start/End: Complemental strand, 43143749 - 43143710
Alignment:
Q  500 cgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43143749 cgaccccgggcggtcgcccgggctcgatcgataatttttg 43143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 539
Target Start/End: Complemental strand, 3293060 - 3293022
Alignment:
Q  501 gaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttg 3293022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 539
Target Start/End: Original strand, 7769307 - 7769369
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||  |||||   |||||||| |||||||||||||||||||| |||||||||||    
T  7769307 ccatgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 10352959 - 10352881
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| | ||| | |||||||||| ||||||||||||||||||| | || | | |||||||||||    
T  10352959 tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctctct 10352881  T

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Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 660
Target Start/End: Complemental strand, 29996058 - 29995982
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctct 660  Q
    |||||||||||| |||||| |  || | |||||| ||| ||||||||||| |||||||||||||| | |||||||||    
T  29996058 tttgggcaatctgaaaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctct 29995982  T

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Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 49908818 - 49908782
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatt 535  Q
    ||||||||||||||||||||||||||||| |||||||    
T  49908818 gcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 646
Target Start/End: Original strand, 26448144 - 26448206
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattg 646  Q
    |||||||||||| |||||| ||| |   |||||||| | ||||||||||||||||||||||||    
T  26448144 tttgggcaatctgaaaattctcatacacaaataggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 527
Target Start/End: Original strand, 27363344 - 27363390
Alignment:
Q  481 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgat 527  Q
    |||||||| |||||| | |||||| ||||||||||||||||||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgat 27363390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 612 - 662
Target Start/End: Complemental strand, 30077678 - 30077628
Alignment:
Q  612 aaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| ||||||||||||||||||| || | | |||||||||||    
T  30077678 aaataggtcttgaaattttatttagcacactagtgccggattcatctctct 30077628  T

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Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 30110108 - 30110145
Alignment:
Q  625 aattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||||||||||||||| | |||||||||||    
T  30110108 aattttatttagcacactattgacgggttcatctctct 30110145  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 48130111 - 48130148
Alignment:
Q  625 aattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||||||||||||||| | |||||||||||    
T  48130111 aattttatttagcacactattgacgggttcatctctct 48130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 5517530 - 5517494
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatt 535  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5517530 gcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 10353050 - 10353010
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  10353050 gcgacccctggcggtcgcccgggctcaatcgataatttttg 10353010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 50205243 - 50205203
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  50205243 gcgatcccgggcggtcgcccgagctcgatcgataatttttg 50205203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 477 - 662
Target Start/End: Original strand, 17821 - 18012
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 568  Q
    ||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| |||||||||||        |||||||||||||| || |||||||||||    
T  17821 ccatgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatt 17919  T
Q  569 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
     ||            |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17920 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagtttcatctctct 18012  T

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Target: scaffold0002 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 480644 - 480454
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 480546  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  480545 a-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 480454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 398597 - 398787
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 398695  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  398696 a-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 398787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 13837913 - 13837991
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  13837913 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 13837991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 18339198 - 18339276
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  18339198 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 18339276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 28996822 - 28996900
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  28996822 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 28996900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 478 - 662
Target Start/End: Complemental strand, 34948945 - 34948755
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||| |||||||||||        |||||||||||||| || |||||||||||     
T  34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 34948847  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||| ||||||||||||   |||||| ||||| |||||||||||||||||||||||| | ||||| |||||    
T  34948846 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcatgtctct 34948755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 29743375 - 29743453
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| | ||| | |||||||||| ||||||||||||||||||||| || | | |||||||||||    
T  29743375 tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgccggattcatctctct 29743453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 33229411 - 33229333
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| | ||| ||||||| |||| || ||||||||||||||||||||| | | |||||||||||    
T  33229411 tttgggcaatctgaaaattcttacacgtaaataagtctcgggattttatttagcacactattgccggattcatctctct 33229333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 539
Target Start/End: Original strand, 13837801 - 13837862
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||||||||| | ||||||||||||| |||| |||| ||||| |||||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttg 13837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 18339107 - 18339147
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  18339107 gcgaccccgggcggtcgcccgggctcgatcaataatttttg 18339147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 28996731 - 28996771
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  28996731 gcgaccccgggcggtcgcccgagctcgatcgataatttttg 28996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 534
Target Start/End: Original strand, 13647018 - 13647053
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataat 534  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13647018 gcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 26144235 - 26144425
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 26144333  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26144334 a-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 26144425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 7433425 - 7433615
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    |||||||||||||||||| | || |||||||||||||||||| |||||||  ||||||||||        |||||||||||||| || |||||||||||     
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagccc-attaacacattt 7433523  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||            |||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||| | ||||| |||||    
T  7433524 acaaaaagaaaat-tttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcatgtctct 7433615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 32982131 - 32982053
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| |||||| ||||||||||||   |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32982131 tttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctctct 32982053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 3829076 - 3829153
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||| | | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  3829076 tttgggcaatctgaaaattttcatacgcaaataggtct-ggaattttatttagcacactattgacgggttcatctctct 3829153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 658
Target Start/End: Original strand, 17445405 - 17445479
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 658  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||| ||||||| | |||||||    
T  17445405 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 42311016 - 42310938
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||||||||| | ||||| |||||| |||||||||||| || |||||||| | |||||||||||    
T  42311016 tttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctctct 42310938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 321452 - 321374
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||| | | |||||||||| ||||||||||||| |||| ||||||| | |||||||||||    
T  321452 tttgggcaatctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctctct 321374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 35907644 - 35907722
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||| ||||| |||||| ||||| | |||||||||| |||||||||||||||||| |||||||   |||||||||||    
T  35907644 tttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctctct 35907722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 23313218 - 23313276
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattt 536  Q
    |||||||||||||||||| | |||| | |||||||| ||||||||||||||||| ||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgattt 23313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 539
Target Start/End: Complemental strand, 32982236 - 32982182
Alignment:
Q  485 ggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||| | |||||||||||||||||| ||||| |||| |||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttg 32982182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 539
Target Start/End: Complemental strand, 42311125 - 42311067
Alignment:
Q  481 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||||||||||| | |||||||| | || ||||||||||||||| |||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttg 42311067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 539
Target Start/End: Complemental strand, 41972464 - 41972401
Alignment:
Q  475 acccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||| ||||||||| |||||  |||||||||||||||||| || |||||||| |||||||||||    
T  41972464 acccaggggcggttccaccgtccagcgaccccgggcggtcg-cctggctcgatcgataatttttg 41972401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 33489839 - 33489876
Alignment:
Q  625 aattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||||||||||||||| | |||||||||||    
T  33489839 aattttatttagcacactattgacgggttcatctctct 33489876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Complemental strand, 41972290 - 41972253
Alignment:
Q  625 aattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||||||||||||||| | |||||||||||    
T  41972290 aattttatttagcacactattgacgggttcatctctct 41972253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 35907553 - 35907593
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  35907553 gcgacctcgggcggtcgcccgggcttgatcgataatttttg 35907593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 477 - 662
Target Start/End: Original strand, 501 - 692
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 568  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||    
T  501 ccatgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacatt 599  T
Q  569 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
     |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  600 ta-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 478 - 662
Target Start/End: Original strand, 39914495 - 39914684
Alignment:
Q  478 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 569  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 39914593  T
Q  570 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39914594 a--taaaaaaaaaatttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 39914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 482 - 648
Target Start/End: Original strand, 15838270 - 15838441
Alignment:
Q  482 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 573  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||        |||||||| |||||||| ||||||||||| ||      
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 15838368  T
Q  574 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgac 648  Q
              |||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  15838369 aagaaaaa--tttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgac 15838441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 662
Target Start/End: Complemental strand, 29728580 - 29728383
Alignment:
Q  471 atgtacccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaa 562  Q
    ||||||||| ||||||||||||||| | |||||||||| |||||||||| ||||||| ||||| |||||        ||||||||||||||  | |||||    
T  29728580 atgtacccaggggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctc-attaa 29728482  T
Q  563 cacattcacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||| ||            |||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  29728481 cacatttacaaaaagaaaaa-tttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctctct 29728383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 16788100 - 16788022
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||| | ||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  16788100 tttgggcaatcttaaaactctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 16788022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 584 - 660
Target Start/End: Complemental strand, 3648869 - 3648793
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctct 660  Q
    |||||||||||| |||||||||||| | || ||||| |||||||||||||||||||||||||||| | |||||||||    
T  3648869 tttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctct 3648793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 4404100 - 4404178
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||| |||||  | |||||||||||    
T  4404100 tttgggcaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctct 4404178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 9877312 - 9877390
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| | |||||||||||||||||||||| ||  |||||||||||    
T  9877312 tttgggcaatctgaaaattctcacatgcaaataggtctcgaaattttatttagcacactattgtcaaattcatctctct 9877390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 23402200 - 23402278
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| | ||||||||||| |||||||||||| | |||||||||||    
T  23402200 tttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctctct 23402278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 34136900 - 34136822
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| | ||||||||||||||||| |||||  | |||||||||||    
T  34136900 tttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctctct 34136822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 660
Target Start/End: Original strand, 42231029 - 42231105
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctct 660  Q
    |||||||||| | |||||| ||| | | ||||||||||  ||||||||||||||||||||||||| | |||||||||    
T  42231029 tttgggcaatttgaaaattctcatatgcaaataggtctcagaattttatttagcacactattgacggattcatctct 42231105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 539
Target Start/End: Complemental strand, 34137013 - 34136951
Alignment:
Q  477 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    ||||||| ||||  ||||| | ||||||||| ||||||||||||||||||| |||||||||||    
T  34137013 ccatgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttg 34136951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 16788188 - 16788151
Alignment:
Q  502 accccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||||||||||||||||| |||||||||||    
T  16788188 accccgggcggtcgcccgggctcgatcgataatttttg 16788151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 4404009 - 4404049
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  4404009 gcgaccccaggcggtcgcccgggctcgatcgataatttttg 4404049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 36408552 - 36408592
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  36408552 gcgacctcgggcggtcgcccgggctcgatcgataatttttg 36408592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 538
Target Start/End: Complemental strand, 2729362 - 2729323
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataattttt 538  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  2729362 gcgaccccgggcggacgcccgggctcgatcgataattttt 2729323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 534
Target Start/End: Original strand, 23402109 - 23402144
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataat 534  Q
    ||||||||||||||||||||||||||||| ||||||    
T  23402109 gcgaccccgggcggtcgcccgggctcgatcgataat 23402144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 3648978 - 3648921
Alignment:
Q  481 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt 538  Q
    ||||||||||||||| | |||| || || | |||||||||||||||| ||||||||||    
T  3648978 gggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttt 3648921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Complemental strand, 40470509 - 40470472
Alignment:
Q  625 aattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||||||||||||||| | |||||||||||    
T  40470509 aattttatttagcacactattgacgggttcatctctct 40470472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 5322 - 5400
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  5322 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 5400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 5231 - 5271
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  5231 gcgaccccgggcggtcgcccgggctcgatcaataatttttg 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 53017 - 53095
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| |||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  53017 tttggacaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 53095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 31572 - 31650
Alignment:
Q  584 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 662  Q
    ||||| |||||| |||||| ||||  | |||||||||| | |||||||||| ||||||||||||||| |||||||||||    
T  31572 tttggacaatctgaaaattctcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctctct 31650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 31481 - 31521
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgattgataatttttg 539  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  31481 gcgaccccagacggtcgcccgggctcgatcgataatttttg 31521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 527
Target Start/End: Original strand, 1278 - 1306
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgat 527  Q
    |||||||||||||||||||||||||||||    
T  1278 gcgaccccgggcggtcgcccgggctcgat 1306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 527
Target Start/End: Original strand, 194029 - 194057
Alignment:
Q  499 gcgaccccgggcggtcgcccgggctcgat 527  Q
    |||||||||||||||||||||||||||||    
T  194029 gcgaccccgggcggtcgcccgggctcgat 194057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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