View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14904_low_9 (Length: 437)
Name: NF14904_low_9
Description: NF14904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14904_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 417
Target Start/End: Original strand, 19785745 - 19786152
Alignment:
| Q |
10 |
attattcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19785745 |
attatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatg |
19785844 |
T |
|
| Q |
110 |
gggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggag |
209 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
19785845 |
gggtttgattccttacaatagagttgcttctgtggcgatgaagttttataaggaaaagtttttgaagcatgataaggagaggtttgagaagtacttgaag |
19785944 |
T |
|
| Q |
210 |
gatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagt |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19785945 |
gatgtgaaggcaggaaagactactattgctgctggtgctttgcttcctcaccagattatagagtctttgggggatggagatggtggagaagttgctgagt |
19786044 |
T |
|
| Q |
310 |
tgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
19786045 |
tgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtgtgatgtttctgggagcatgtctgggactcctat |
19786144 |
T |
|
| Q |
410 |
ggaggtgt |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
19786145 |
ggaggtgt |
19786152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 19795842 - 19795432
Alignment:
| Q |
10 |
attattcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatg |
109 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19795842 |
attatgcttatagggttcgtgatcggttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatg |
19795743 |
T |
|
| Q |
110 |
gggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggag |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19795742 |
gggtttgattccatacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggag |
19795643 |
T |
|
| Q |
210 |
gatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
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|
| T |
19795642 |
gatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttggatgatgaagatggtggagaagtggctgagt |
19795543 |
T |
|
| Q |
310 |
tgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||| |
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|
| T |
19795542 |
tgcagtggaagagaattgttgatgatttgctcaagaagggaaaaatgaggaattgtcttgctgtgtgtgatgtgtctgggagtatgcatgggacccctat |
19795443 |
T |
|
| Q |
410 |
ggaggtgtgtg |
420 |
Q |
| |
|
||||||||||| |
|
|
| T |
19795442 |
ggaggtgtgtg |
19795432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 417
Target Start/End: Complemental strand, 15835149 - 15834742
Alignment:
| Q |
10 |
attattcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
15835149 |
attatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggcgttgcaattgcctgaggtgtttattggggctaatcaatg |
15835050 |
T |
|
| Q |
110 |
gggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggag |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
15835049 |
gggtttgattccttataatagggttgcttctgtggccatggagttttataaggagaagtttttgaagcatgatgaggagaggtttgagaagtacttgcag |
15834950 |
T |
|
| Q |
210 |
gatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagt |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||||||| | ||||| |
|
|
| T |
15834949 |
gatgtgaaggcagggaagactactatggctgctggtgctttgcttcctcataagattataaagtcttttttgaatggatatggtggagaagtggatgagt |
15834850 |
T |
|
| Q |
310 |
tgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||| |||||| ||||| |
|
|
| T |
15834849 |
tgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtctgatgtgtctgcgagtatgtatgggacccctat |
15834750 |
T |
|
| Q |
410 |
ggaggtgt |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
15834749 |
ggaggtgt |
15834742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 47712741 - 47712331
Alignment:
| Q |
10 |
attattcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
47712741 |
attatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccattgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatg |
47712642 |
T |
|
| Q |
110 |
gggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggag |
209 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
47712641 |
gaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggag |
47712542 |
T |
|
| Q |
210 |
gatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagt |
309 |
Q |
| |
|
|||||||| | ||||||||||| || ||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||| || || |||| |
|
|
| T |
47712541 |
gatgtgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgatattattcggtcgttgggggatggagatggtggagaggtggcggagt |
47712442 |
T |
|
| Q |
310 |
tgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctat |
409 |
Q |
| |
|
| ||||||| |||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||| |||||| ||||| |
|
|
| T |
47712441 |
tacagtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctat |
47712342 |
T |
|
| Q |
410 |
ggaggtgtgtg |
420 |
Q |
| |
|
||| ||||||| |
|
|
| T |
47712341 |
ggatgtgtgtg |
47712331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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