View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14905_high_2 (Length: 384)
Name: NF14905_high_2
Description: NF14905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14905_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 44109332 - 44109651
Alignment:
| Q |
17 |
aataatttgcctcttcaaagctatatgtctcacaaagttggatgaaagtgatttggatttttgtaataactgtacagaatgcaaaacatcaatgtggatc |
116 |
Q |
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| T |
44109332 |
aataatttgcctcttcaaagctatatgtctctcaaagttggatgaaagtgatttgaatttttgtaataactgtacagaatgcaaaacatcaatgtggatc |
44109431 |
T |
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| Q |
117 |
tgtatcaacatgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaagg |
216 |
Q |
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| T |
44109432 |
tgtatcaacctgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcaaacgctttgaagg |
44109531 |
T |
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| Q |
217 |
tatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgcgtattgatgcgcaatgttgcctttagttgtgtttcc |
316 |
Q |
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| T |
44109532 |
tatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgtgtattgatgcgcaatgttgcctttagttgtgtttcc |
44109631 |
T |
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| Q |
317 |
catgcaaatctatttctgtt |
336 |
Q |
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| T |
44109632 |
catgcaaatctatttctgtt |
44109651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 141 - 272
Target Start/End: Complemental strand, 40450897 - 40450765
Alignment:
| Q |
141 |
tctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatca |
240 |
Q |
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| T |
40450897 |
tctccttattcggttgtgctactgagtggacttgcaagtgtcaagtctcttacactatcaaaggacacttttagggtatgtattaccttttctctcatca |
40450798 |
T |
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| Q |
241 |
tcatcattt-atctttttaaatattgtgtataa |
272 |
Q |
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| T |
40450797 |
tcttcatttaatctttttaaatattgtgtataa |
40450765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 330
Target Start/End: Original strand, 40276437 - 40276557
Alignment:
| Q |
215 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatata-----atgcgtattgatgcgcaatgttgcctttagttg |
309 |
Q |
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| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
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| Q |
310 |
tgtttcccatgcaaatctatt |
330 |
Q |
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| T |
40276537 |
tgtttcccatgcaagtctatt |
40276557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 43760251 - 43760320
Alignment:
| Q |
27 |
ctcttcaaagctatatgtctcacaaagttggatgaaagtgatttggatttttgtaataactgtacagaat |
96 |
Q |
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| T |
43760251 |
ctcttcaaagctatctgcctctcaaagtttgatgaaagtgatttgaatttttgtaataactgaacagaat |
43760320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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