View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14905_low_1 (Length: 436)
Name: NF14905_low_1
Description: NF14905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14905_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 238 - 431
Target Start/End: Complemental strand, 35286821 - 35286628
Alignment:
| Q |
238 |
ttcattgaaagtcttatttataacctgtccagttgcaggaataacccctttatagactcttccaaagcctccttcgctaagtagacactcctgtcggaaa |
337 |
Q |
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| T |
35286821 |
ttcattgaaagccttatttataacctgtccagttgcaggaataacccctttatagactcttccaaagcctccttcgctaagtagacactcctgtcggaaa |
35286722 |
T |
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| Q |
338 |
ttctttgttgctgttgctagctcacggaaagtgaaattttgtgcattaatgtttgtcggatctccttgcatttgctcatctgccctttgcttct |
431 |
Q |
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| T |
35286721 |
ttctttgttgctgttgctagctcacggaaagtgaaattttgtgcattaatgtttgtcggatctccttgcatttgctcatctgccctttgtttct |
35286628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 35287039 - 35286859
Alignment:
| Q |
20 |
ataccaaaagacgttgatcaccatctgcacaataaccaatgagattgacaagattttcatggtgaacatggctcagaagagaaacttcagtcagaaattc |
119 |
Q |
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| T |
35287039 |
ataccaaaagacgttgatcaccatctgcacaataaccaatgagattgacaagattttcatggtgaacatggctcagaagagaaacttcagtcagaaattc |
35286940 |
T |
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| Q |
120 |
cttgctgttttcggtcccatgtcgatcgagttgcttcacggctacaacctgaataatggttgcaaataaaacaatgaggag |
200 |
Q |
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| T |
35286939 |
cttgctgttttcggtcccatgtcgatcgagttgcttcacggctacaacctgaataatggttgcaaataaaacaatgaggag |
35286859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 48173286 - 48173346
Alignment:
| Q |
22 |
accaaaagacgttgatcaccatctgcacaataaccaatgagattgacaagattttcatggt |
82 |
Q |
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| T |
48173286 |
accaaaagacgttgatcgccatcagcacaataaccagtgagtttgacaagattttcatggt |
48173346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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