View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14905_low_3 (Length: 382)
Name: NF14905_low_3
Description: NF14905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14905_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 40641889 - 40641541
Alignment:
| Q |
17 |
ttaattttagtgcttaaggaatacacannnnnnncaaaggtgacctagataattaaaatttctgtattcnnnnnnntaatcccttatagtaaactttcag |
116 |
Q |
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| T |
40641889 |
ttaattttagtgcttaaggaatatacatttttttcaaaggtgacctagataattatgatttctgtattcaaaaaaataatcccttatagtaaactttcag |
40641790 |
T |
|
| Q |
117 |
aaaagataaaatcatcttctaataaaattaaggatgtgaacaaatagttatctttttggtaacaaattgctatctgaatcccttatatgcatttcataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40641789 |
aaaagataaaatcatcttctaataaaattaaggatgtgaacaaatagttatctttttggtaacaaattgctatctgaatcccttatgtgcatttcataaa |
40641690 |
T |
|
| Q |
217 |
aggttttaactaatcagaatcaagattaagaagaggttcccctcnnnnnnnggttaagctatgtttggattgatgaaatgtaatagagtggagcggaatg |
316 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||| |
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| T |
40641689 |
aggttttaactaatcagagtcaagattaagaaaaggttcccctcaaaaaaaggttaagctctgtttggattgatgaaacgtaatagattggagcggaatg |
40641590 |
T |
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| Q |
317 |
gaactcaatgaaatggaacggaatggaatagagattctatcacgtcata |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40641589 |
gaactcaatgaaatggaacggaatggaatagagattctgtcacgtcata |
40641541 |
T |
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