View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14905_low_4 (Length: 365)

Name: NF14905_low_4
Description: NF14905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14905_low_4
NF14905_low_4
[»] chr2 (4 HSPs)
chr2 (10-198)||(45622936-45623111)
chr2 (218-281)||(45623235-45623296)
chr2 (221-274)||(9809470-9809522)
chr2 (218-274)||(16248453-16248507)
[»] chr8 (2 HSPs)
chr8 (218-281)||(7935038-7935101)
chr8 (218-281)||(34578582-34578645)
[»] chr7 (1 HSPs)
chr7 (218-265)||(27128904-27128951)
[»] chr4 (1 HSPs)
chr4 (218-274)||(31888821-31888875)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 45622936 - 45623111
Alignment:
Q  10 acatcatcatgcgaccagagtctggtgaaagggccgtcgaagtgaagcaacgaaaggacggtggcagccaggtcataattgctctttcatgttggtagta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622936 acatcatcatgcgaccagagtctggtgaaagggccgtcgaagtgaagcaacgaaaggacggtggcagccaggtcataattgctctttcatgttggtagta 45623035  T
Q  110 aaatatataataattaattagctttgtatattagctttgtcaatattattttttactatagtatatactaccgtataaagcatcaccca 198  Q
    ||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45623036 aaatatataataatta-------------attagctttgtcaatattattttttactatagtatatactaccgtataaagcatcaccca 45623111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 45623235 - 45623296
Alignment:
Q  218 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 281  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  45623235 ttgatctaaaggttgagacaca--gagggaagagaaaattaggggagagagaaaagtctatcct 45623296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 9809470 - 9809522
Alignment:
Q  221 atctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 274  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  9809470 atctaaaggttgagacacaa-gagggaagagaaaattagaggagagagaaaagt 9809522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 16248453 - 16248507
Alignment:
Q  218 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 274  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||    
T  16248453 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagt 16248507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 7935101 - 7935038
Alignment:
Q  218 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7935101 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagagagaaaagtctatcct 7935038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 34578582 - 34578645
Alignment:
Q  218 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 281  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  34578582 ttgatctaaaggttgagacacaaagagggaagagaaaattaagggagagagaaaagtctatcct 34578645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 27128951 - 27128904
Alignment:
Q  218 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggaga 265  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||    
T  27128951 ttgatctaaaggttgagacacaaagaggaaagagaaaattagaggaga 27128904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 31888875 - 31888821
Alignment:
Q  218 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 274  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||    
T  31888875 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagt 31888821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University