View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14905_low_6 (Length: 297)

Name: NF14905_low_6
Description: NF14905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14905_low_6
NF14905_low_6
[»] chr2 (1 HSPs)
chr2 (1-297)||(23226603-23226899)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 23226899 - 23226603
Alignment:
Q  1 cactccaatgcaatcctcaccactccagaagccatttctctaaccaaaacacttgttggtgttgctagctcaattaagaatgtagggctcaactttgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23226899 cactccaatgcaatcctcaccactccagaagccatttctctaaccaaaacacttgttggtgttgctagctcaattaagaatgtagggctcaactttgagt 23226800  T
Q  101 catcttggaaagcaaaatggacatgtccacgacggtatccgaaaagggtgcccaccatacgtgtgccactagaactgtgaagtgaacggttctttgtgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23226799 catcttggaaagcaaaatggacatgtccacgacggtatccgaaaagggtgcccaccatacgtgtgccactagaactgtgaagtgaacggttctttgtgag 23226700  T
Q  201 aattgttagtgctaacttgaactttgattttgaattctgcttcgttgcaagagcagcaacttctaatggcatttggattcttaaatgaatatgatga 297  Q
    ||||||||||||| |||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  23226699 aattgttagtgctgacttgaactttgattttgaattcttcttcttttcaagagcagcaatttctaatggcatttggattcttaaatgattatgatga 23226603  T

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