View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14906_high_1 (Length: 634)

Name: NF14906_high_1
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14906_high_1
NF14906_high_1
[»] chr1 (1 HSPs)
chr1 (7-634)||(25574766-25575394)


Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 25575394 - 25574766
Alignment:
Q  7 ctcaccaatctgtgctctgcccacattctcctgggaattagctaaaagagaaccactagagtaatcttctttgtcatcctttctgtcatagccacaggaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25575394 ctcaccaatctgtgctctgcccacattctcctgggaattagctaaaagagaaccactagagtaatcttctttgtcatcctttctgtcatagccacaggaa 25575295  T
Q  107 ggtttgtagcgatcaaattccaaagtattcccattcccgcagtcagttgccttgccatgagttggctcggcccctctaccaatgcgaccctggttaggaa 206  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25575294 ggtctgtagcgatcaaattccaaagtattcccattcccgcagtcagttgccttgccatgagttggctcggcccctctaccaatgcgaccctggttaggaa 25575195  T
Q  207 caacatggccaccttcatctggaaagtctcttcgacgannnnnnnnn-ctccatcgcaatacttaaaaccatctcgacaatactccccctcttcaacaga 305  Q
    ||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25575194 caacatggccaccttcatctggaaagtctcttcgacgatttttttcttctccatcgcaatacttaaaaccatctcgacgatactccccctcttcaacaga 25575095  T
Q  306 ctcgcccctttcaacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatctgtcaaaaatcctctta 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25575094 ctcgcccctttcaacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatttgtcaaaaatcctctta 25574995  T
Q  406 ccttgcaactcataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagtt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25574994 ccttgcaactcataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagtt 25574895  T
Q  506 ccccacatatctttctacctttcaattctctcaaagctttctccgcatccgaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaac 605  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25574894 ccccacatatctttgtacctttcaattccctcaaagctttctccgcatccaaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaac 25574795  T
Q  606 attacaatgcccaaatctaccaaaaactc 634  Q
    ||||||| |||||||||||||||||||||    
T  25574794 attacaacgcccaaatctaccaaaaactc 25574766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University