View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14906_high_10 (Length: 249)
Name: NF14906_high_10
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14906_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 38448866 - 38448758
Alignment:
| Q |
1 |
cattcttaaatcagaagcttcgaaatgactttggaatgtacgctaatagaaaccattttgatgacatggaaataaaggatgattaggaatcaataataat |
100 |
Q |
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| T |
38448866 |
cattcttaaatcagaagcttggaaatgactttggaatttacgctaatagaaaccattttgatgacatggaaataaaggatgattaggaatcaataataat |
38448767 |
T |
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| Q |
101 |
gagttccaa |
109 |
Q |
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||||||||| |
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| T |
38448766 |
gagttccaa |
38448758 |
T |
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Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 38448673 - 38448574
Alignment:
| Q |
124 |
gccatgatttttccttctcagcagccacaatagtatgaccataaagcataataattcacatttaataagcaataaggtgaaggaaaaagaatactgacat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448673 |
gccatgatttttccttctcagcagccacaatagtatgaccataaagcataataattcacatttaataagcaataaggtgaaggaaaaagaatactgacat |
38448574 |
T |
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