View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14906_high_11 (Length: 235)

Name: NF14906_high_11
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14906_high_11
NF14906_high_11
[»] chr4 (12 HSPs)
chr4 (18-219)||(6280638-6280839)
chr4 (18-67)||(4980008-4980057)
chr4 (18-67)||(28320492-28320541)
chr4 (18-66)||(44051183-44051231)
chr4 (18-67)||(46165679-46165728)
chr4 (18-65)||(4975752-4975799)
chr4 (21-63)||(37959814-37959856)
chr4 (21-67)||(38464859-38464905)
chr4 (21-66)||(46097041-46097086)
chr4 (21-66)||(49572994-49573039)
chr4 (27-63)||(18581395-18581431)
chr4 (18-66)||(50278889-50278937)
[»] chr8 (10 HSPs)
chr8 (18-66)||(2147047-2147095)
chr8 (18-66)||(39753088-39753136)
chr8 (27-66)||(34823116-34823155)
chr8 (18-66)||(43377343-43377391)
chr8 (18-69)||(34503149-34503200)
chr8 (21-66)||(39751008-39751053)
chr8 (18-66)||(35389442-35389490)
chr8 (19-66)||(41250163-41250210)
chr8 (21-66)||(5300681-5300726)
chr8 (21-66)||(18438568-18438613)
[»] chr1 (14 HSPs)
chr1 (18-67)||(49924789-49924838)
chr1 (21-66)||(1872042-1872087)
chr1 (18-66)||(49874942-49874990)
chr1 (18-67)||(9618655-9618704)
chr1 (21-67)||(6437633-6437679)
chr1 (20-66)||(8460189-8460235)
chr1 (21-67)||(18975214-18975260)
chr1 (21-63)||(26633467-26633509)
chr1 (21-63)||(35521551-35521593)
chr1 (21-63)||(41804127-41804169)
chr1 (18-67)||(640986-641035)
chr1 (18-67)||(22345194-22345243)
chr1 (18-66)||(22346104-22346152)
chr1 (18-66)||(38127580-38127628)
[»] chr6 (7 HSPs)
chr6 (18-66)||(29286163-29286211)
chr6 (21-67)||(18605978-18606024)
chr6 (18-66)||(25141170-25141218)
chr6 (18-67)||(2052674-2052722)
chr6 (18-67)||(7361124-7361173)
chr6 (23-67)||(13401419-13401463)
chr6 (27-63)||(17996542-17996578)
[»] scaffold0794 (1 HSPs)
scaffold0794 (19-66)||(5218-5265)
[»] chr2 (14 HSPs)
chr2 (19-66)||(41183303-41183350)
chr2 (21-67)||(25184923-25184969)
chr2 (18-67)||(4014201-4014250)
chr2 (21-66)||(35493435-35493480)
chr2 (21-67)||(16580478-16580524)
chr2 (18-63)||(435280-435325)
chr2 (21-66)||(41181371-41181416)
chr2 (18-67)||(41497405-41497454)
chr2 (18-66)||(24607659-24607707)
chr2 (18-65)||(41004464-41004511)
chr2 (18-67)||(15488233-15488282)
chr2 (18-66)||(9660146-9660194)
chr2 (18-66)||(41052615-41052663)
chr2 (18-66)||(41053759-41053807)
[»] chr3 (18 HSPs)
chr3 (21-67)||(2433037-2433083)
chr3 (18-67)||(6489266-6489315)
chr3 (18-66)||(6506042-6506090)
chr3 (25-67)||(7247958-7248000)
chr3 (21-66)||(19454419-19454464)
chr3 (18-66)||(7837526-7837574)
chr3 (18-66)||(41805766-41805814)
chr3 (18-66)||(55267375-55267423)
chr3 (21-63)||(29929363-29929405)
chr3 (21-63)||(29978517-29978559)
chr3 (21-67)||(52567696-52567742)
chr3 (18-63)||(37686185-37686230)
chr3 (21-66)||(46344871-46344916)
chr3 (18-66)||(32060303-32060351)
chr3 (19-67)||(50216946-50216994)
chr3 (18-66)||(51696606-51696654)
chr3 (18-66)||(55205271-55205319)
chr3 (19-63)||(55385074-55385118)
[»] chr7 (12 HSPs)
chr7 (18-67)||(34622432-34622481)
chr7 (21-67)||(28980267-28980313)
chr7 (18-67)||(35839323-35839372)
chr7 (21-66)||(48269615-48269660)
chr7 (21-66)||(48314608-48314653)
chr7 (18-66)||(34623471-34623519)
chr7 (21-67)||(19044227-19044273)
chr7 (21-67)||(20710363-20710409)
chr7 (21-67)||(41623909-41623955)
chr7 (27-63)||(11100547-11100583)
chr7 (18-66)||(30471630-30471678)
chr7 (18-66)||(48829897-48829945)
[»] scaffold0192 (1 HSPs)
scaffold0192 (18-66)||(25886-25934)
[»] scaffold0169 (1 HSPs)
scaffold0169 (18-66)||(1736-1784)
[»] chr5 (11 HSPs)
chr5 (21-67)||(25877555-25877601)
chr5 (18-67)||(8680333-8680382)
chr5 (21-66)||(18310115-18310160)
chr5 (18-66)||(7796595-7796643)
chr5 (18-66)||(31094497-31094545)
chr5 (28-67)||(3603249-3603288)
chr5 (27-66)||(20200248-20200287)
chr5 (21-67)||(20192286-20192332)
chr5 (21-66)||(26366822-26366867)
chr5 (21-61)||(33995242-33995282)
chr5 (18-66)||(38407133-38407181)
[»] scaffold0340 (1 HSPs)
scaffold0340 (18-67)||(1271-1320)
[»] scaffold0618 (1 HSPs)
scaffold0618 (21-66)||(3820-3865)
[»] scaffold0219 (1 HSPs)
scaffold0219 (18-66)||(20204-20252)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 6280839 - 6280638
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctcacgaatactaaaagaccatctgatttcacatggctctgatggcactgatcc 117  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  6280839 aaattactcgtgtgccccaaccttatgcaatgtgtcaacaacaattctcataaatactaaaagaccatctgatttcacgtggctctgatggcactgatcc 6280740  T
Q  118 atttaatcagcataagttcttttcttacaaattatattaacgagaaccattaacgtaacgcggttttcagtttccatttgtgattattttttcgtgttat 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280739 atttaatcagcataagtttttttcttacaaattatattaacgagaaccattaacgtaacgcggttttcagtttccatttgtgattattttttcgtgttat 6280640  T
Q  218 ct 219  Q
    ||    
T  6280639 ct 6280638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 4980008 - 4980057
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4980008 aaattactcgtgtgcctcaaccttatgcaatgtgtcaacaacaattctca 4980057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 28320541 - 28320492
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  28320541 aaattactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctca 28320492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 44051183 - 44051231
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  44051183 aaattactggtgtgcctcagccttatgcaatgtgtcaacaacaattctc 44051231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 46165728 - 46165679
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||| ||||| | || ||||||||||||||||||||||||||||||    
T  46165728 aaattactagtgtgacacagccttatacaatgtgtcaacaacaattctca 46165679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 4975799 - 4975752
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattct 65  Q
    ||||||||||||||||||| |||| | ||||||||||| |||||||||    
T  4975799 aaattactcgtgtgcctcagcctttttcaatgtgtcaataacaattct 4975752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 37959814 - 37959856
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  37959814 ttactcgtgtgcctcagccttatgtaatgtgtcaacaacaatt 37959856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 38464859 - 38464905
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  38464859 ttactcatgtacctcaaccttatgaaatgtgtcaacaacaattctca 38464905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 46097041 - 46097086
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||||    
T  46097041 ttactcgtgtgtctcagccttatgcaatgtatcaacaacaattctc 46097086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 49572994 - 49573039
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||| |||||||||| |||||| ||||||||||||||| ||||||    
T  49572994 ttacttgtgtgcctcagccttatgcaatgtgtcaacaacgattctc 49573039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 18581395 - 18581431
Alignment:
Q  27 gtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    |||||||||||||||||  ||||||||||||||||||    
T  18581395 gtgtgcctcaaccttatgaaatgtgtcaacaacaatt 18581431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 50278889 - 50278937
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||| |||||||||  ||||||  |||||||||||||    
T  50278889 aaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 50278937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 2147047 - 2147095
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2147047 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 2147095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39753088 - 39753136
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  39753088 aaattactcgtgtgcctgagccttatacaatgtgtcaacaacaattctc 39753136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 34823116 - 34823155
Alignment:
Q  27 gtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34823116 gtgtgcctcaaccttatacaatgtgtcaacaacaattctc 34823155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 43377343 - 43377391
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  43377343 aaattactcgtgtgcctcagccttatgcaacgtgtcaacaacaattctc 43377391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 34503149 - 34503200
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctcacg 69  Q
    |||||||||||||| | || |||||| |||||||||||||||||||||||||    
T  34503149 aaattactcgtgtgacacacccttatgcaatgtgtcaacaacaattctcacg 34503200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 39751053 - 39751008
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||    
T  39751053 ttactcgtgtgcctcaacattatgcaatgtgtcaacagcaattctc 39751008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 35389490 - 35389442
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||| || |||| |||||| ||||||||||||||||||||||    
T  35389490 aaattactcgtatgtctcagccttatgcaatgtgtcaacaacaattctc 35389442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 41250163 - 41250210
Alignment:
Q  19 aattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||    
T  41250163 aattactcgtgtgccacaaccttatgcaatgtgggaacaacaattctc 41250210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 5300726 - 5300681
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||    
T  5300726 ttactcgtgtttctcaaccttatcaaatgtgtcaacaacaattctc 5300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 18438613 - 18438568
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  18438613 ttacttgtgtgcatcagccttatgcaatgtgtcaacaacaattctc 18438568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 49924838 - 49924789
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  49924838 aaattactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctca 49924789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 1872087 - 1872042
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  1872087 ttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 1872042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 49874990 - 49874942
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  49874990 aaattactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctc 49874942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 9618704 - 9618655
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||| | || |||||| |||||||||||||||||||||||    
T  9618704 aaattactcgtgtgacacagccttatgcaatgtgtcaacaacaattctca 9618655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 6437633 - 6437679
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||| |||||||||| | |||| |||||||||||||||||||||||    
T  6437633 ttacttgtgtgcctcagctttatgcaatgtgtcaacaacaattctca 6437679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 8460189 - 8460235
Alignment:
Q  20 attactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||| ||||||||| ||||||| |||||||||||| ||||||||    
T  8460189 attactcatgtgcctcagccttatagaatgtgtcaacagcaattctc 8460235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 18975214 - 18975260
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||| |||| ||||| | ||||||||||||||||||||||||||||    
T  18975214 ttacttgtgtacctcagctttatacaatgtgtcaacaacaattctca 18975260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 26633509 - 26633467
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||| |||||||||||||||||  ||||||||||||||||||    
T  26633509 ttacttgtgtgcctcaaccttatgaaatgtgtcaacaacaatt 26633467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 35521593 - 35521551
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  35521593 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 35521551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 41804127 - 41804169
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  41804127 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 41804169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 641035 - 640986
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||| ||||| | || |||||| |||||||||||||||||||||||    
T  641035 aaattactagtgtgacacagccttatgcaatgtgtcaacaacaattctca 640986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 22345243 - 22345194
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||||| | |||||||| |||||||||| | |||||||||    
T  22345243 aaattactcgtgtgccccgaccttatagaatgtgtcaatagcaattctca 22345194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 22346104 - 22346152
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||| |||||||||| |||||  ||||||||||||| ||||||||    
T  22346104 aaattacttgtgtgcctcagccttaagcaatgtgtcaacagcaattctc 22346152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 38127580 - 38127628
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||| |||||||| |   |||||||||||||||||||||    
T  38127580 aaattactcgtgtgtctcaacctaaccaaatgtgtcaacaacaattctc 38127628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 29286211 - 29286163
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  29286211 aaattacttgtgtgcctcaaccttatgcaatgtgtcaacaacaattctc 29286163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 18606024 - 18605978
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18606024 ttactcgtgtgcctcagcctcatacaatgtgtcaacaacaattctca 18605978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 25141170 - 25141218
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  25141170 aaattattcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 25141218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 2052674 - 2052722
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  2052674 aaattactcgtgtgcctcagc-ttatacaatgtgccaacaacaattctca 2052722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 7361173 - 7361124
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||||| || |||||| ||||||||||||| |||||||||    
T  7361173 aaattactcgtgtgccacagccttatgcaatgtgtcaacagcaattctca 7361124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 13401463 - 13401419
Alignment:
Q  23 actcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||  |||||||||||| |||||||||||| |||||||||    
T  13401463 actcgtgttactcaaccttataaaatgtgtcaacatcaattctca 13401419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 17996578 - 17996542
Alignment:
Q  27 gtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  17996578 gtgtgcctcgaccttataaaatgtgtcaacaacaatt 17996542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 5265 - 5218
Alignment:
Q  19 aattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||    
T  5265 aattactcgtgtgcctcagccttatacaatgtgtcaacagcaattctc 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 41183303 - 41183350
Alignment:
Q  19 aattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||    
T  41183303 aattactcgtgtgcctcagccttatacaatgtgtcaacagcaattctc 41183350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 25184923 - 25184969
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  25184923 ttactcgtgtgcctcaaccttatgcaatctgtcaacaacaattctca 25184969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 4014250 - 4014201
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||    
T  4014250 aaattactagtgtgacacaaccttatacaatgtgtcaacaacaattctca 4014201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 35493435 - 35493480
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  35493435 ttactcgtgtgtctcaaccttatgcaatgtgtcaacaacaattctc 35493480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 16580524 - 16580478
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||    
T  16580524 ttactcgtgtgtctcagccttatgcaatgtgtcaacaacaattctca 16580478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 435325 - 435280
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||    
T  435325 aaattactcgtgtgcctcagtcttatacagtgtgtcaacaacaatt 435280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 41181416 - 41181371
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||    
T  41181416 ttactcgtgtgcctcagccttatgcaatgtgtcaacatcaattctc 41181371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 41497454 - 41497405
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||||||||||| |||||| ||||||||||| | |||||||||    
T  41497454 aaattactcgtgtgcctcagccttatgcaatgtgtcaagagcaattctca 41497405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 24607659 - 24607707
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||  |||||||||| |||||| ||||||||||||||||||||||    
T  24607659 aaattacctgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 24607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 41004511 - 41004464
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattct 65  Q
    ||||||||||| ||| ||| |||||||||||||||||||||| |||||    
T  41004511 aaattactcgtatgcatcagccttatacaatgtgtcaacaacgattct 41004464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 15488233 - 15488282
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||  |||| | ||||||||| |||||||||||||||||||||||    
T  15488233 aaattactaatgtgacacaaccttatgcaatgtgtcaacaacaattctca 15488282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9660146 - 9660194
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||| ||||| | |||| ||||||||||||| ||||||||    
T  9660146 aaattactcgtgtacctcagctttatgcaatgtgtcaacagcaattctc 9660194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 41052663 - 41052615
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||| |||||| ||| |||||| |||| |||||||||||||||||    
T  41052663 aaattacttgtgtgcatcagccttatgcaatatgtcaacaacaattctc 41052615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 41053759 - 41053807
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||| |||||||| ||||||  |||||||||||| ||||||||    
T  41053759 aaattactcgcgtgcctcagccttatgtaatgtgtcaacagcaattctc 41053807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 2433037 - 2433083
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  2433037 ttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctca 2433083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 6489315 - 6489266
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  6489315 aaattacttgtgtgcctcaaccttatgcaatgtgtcaacagcaattctca 6489266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 6506042 - 6506090
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  6506042 aaattactcgtgtgcctcagccttatacaatgtgtcaacagtaattctc 6506090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 7247958 - 7248000
Alignment:
Q  25 tcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  7247958 tcgtgtgcctcagccttatccaatgtgtcaacaacaattctca 7248000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 19454419 - 19454464
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||    
T  19454419 ttactcgtgtgtctcaaccttatgcaatgtatcaacaacaattctc 19454464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 7837574 - 7837526
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||| ||||| |||| |||||| ||||||||||||||||||||||    
T  7837574 aaattacttgtgtgtctcagccttatgcaatgtgtcaacaacaattctc 7837526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 41805766 - 41805814
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||| |||||||||| |||||| |||||||||| |||||||||||    
T  41805766 aaattacttgtgtgcctcagccttatgcaatgtgtcatcaacaattctc 41805814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 55267423 - 55267375
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||| |||| |||||| ||| ||||||||||||||||||    
T  55267423 aaattactcgtgtgtctcagccttatgcaacgtgtcaacaacaattctc 55267375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 29929405 - 29929363
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  29929405 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 29929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 29978559 - 29978517
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  29978559 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 29978517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 52567742 - 52567696
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||||| |||||| ||| || ||||||||||||||||    
T  52567742 ttactcgtgtgcctcagccttatgcaacgtatcaacaacaattctca 52567696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 37686230 - 37686185
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    |||||| ||||||| | |||| ||||||||||||||||||||||||    
T  37686230 aaattattcgtgtgacacaactttatacaatgtgtcaacaacaatt 37686185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 46344916 - 46344871
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  46344916 ttacttgtgtgcctcaaccttatccaatttgtcaacatcaattctc 46344871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 32060303 - 32060351
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||| ||||||| |||||| |||||||| || ||||||||||    
T  32060303 aaattactcgtatgcctcagccttatgcaatgtgttaaaaacaattctc 32060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 50216946 - 50216994
Alignment:
Q  19 aattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||||||| |||||||||  ||||||  ||||||||||||||    
T  50216946 aattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctca 50216994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 51696606 - 51696654
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||| || ||||||  |||||| ||||||||||||||    
T  51696606 aaattactcgtgtgccacagccttatcaaatgtggcaacaacaattctc 51696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 55205319 - 55205271
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||| | ||||||| |||||| ||||||||||||| ||||||||    
T  55205319 aaattactcatatgcctcagccttatgcaatgtgtcaacatcaattctc 55205271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 55385118 - 55385074
Alignment:
Q  19 aattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||||    
T  55385118 aattactcgtgtgccacaaccttatgcaatgtgggaacaacaatt 55385074  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 34622481 - 34622432
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  34622481 aaattacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctca 34622432  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 28980267 - 28980313
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||    
T  28980267 ttactcgtgtgtctcagccttatgcaatgtgtcaacaacaattctca 28980313  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 35839372 - 35839323
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  35839372 aaattactagtgtgacacaaccttatgcaatgtgtcaacaacaattctca 35839323  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 48269660 - 48269615
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||    
T  48269660 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaattctc 48269615  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 48314653 - 48314608
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||    
T  48314653 ttacttgtgtacctcaaccttatgcaatgtgtcaacaacaattctc 48314608  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 34623471 - 34623519
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||| ||||||||||| |||| |||||||| ||||||||    
T  34623471 aaattactcgtgtgtctcaaccttatgcaatatgtcaacagcaattctc 34623519  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 19044273 - 19044227
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||| ||||||||| |||||| |||||||||||||| ||||||||    
T  19044273 ttactcatgtgcctcagccttatgcaatgtgtcaacaataattctca 19044227  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 20710363 - 20710409
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||| ||||||||| |||||| |||||||||||||| ||||||||    
T  20710363 ttactcatgtgcctcagccttatgcaatgtgtcaacaataattctca 20710409  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 41623909 - 41623955
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||| |||||||||||||||||  |||||||||||| |||||||||    
T  41623909 ttacttgtgtgcctcaaccttatgtaatgtgtcaacagcaattctca 41623955  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 11100547 - 11100583
Alignment:
Q  27 gtgtgcctcaaccttatacaatgtgtcaacaacaatt 63  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  11100547 gtgtgcctcgaccttataaaatgtgtcaacaacaatt 11100583  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 30471630 - 30471678
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||| | || |||| | ||||||||||||||||||||||    
T  30471630 aaattactcgtgtgacacagccttttgcaatgtgtcaacaacaattctc 30471678  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 48829945 - 48829897
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||| |||||||||  ||||||  |||||||||||||    
T  48829945 aaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 48829897  T

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Target: scaffold0192 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 25934 - 25886
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  25934 aaattactcgtatgcctcagccttatgcaatgtgtcaacaacaattctc 25886  T

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Target: scaffold0169 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 1736 - 1784
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  1736 aaattactcgtgtgcctcagccttatgcaatgtgtcaacatcaattctc 1784  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 25877601 - 25877555
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  25877601 ttactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctca 25877555  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 8680333 - 8680382
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    |||||||||||||| | || |||||| |||||||||||||||||||||||    
T  8680333 aaattactcgtgtgacacagccttatgcaatgtgtcaacaacaattctca 8680382  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 18310115 - 18310160
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||    
T  18310115 ttacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 18310160  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 7796643 - 7796595
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||||||| ||| || ||||||||||||| ||||||||    
T  7796643 aaattactcgtgtgcctcagcctaatgcaatgtgtcaacatcaattctc 7796595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 31094545 - 31094497
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||||||||| | |||||| |||||| |||||||||||||||    
T  31094545 aaattactcgtgtgcctaagccttatgcaatgtatcaacaacaattctc 31094497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 3603249 - 3603288
Alignment:
Q  28 tgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  3603249 tgtgcctcagccttatgcaatgtgtcaacaacaattctca 3603288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 20200248 - 20200287
Alignment:
Q  27 gtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  20200248 gtgtgcctcagccttatgcaatgtgtcaacaacaattctc 20200287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 20192332 - 20192286
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||| |||||||||| ||||||  ||||||||||||||||||||||    
T  20192332 ttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattctca 20192286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 26366867 - 26366822
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||||    
T  26366867 ttactcgtgtgtctcagccttatgcaatgtatcaacaacaattctc 26366822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 33995242 - 33995282
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaa 61  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  33995242 ttacttgtgtgcctcaaccttataaaatatgtcaacaacaa 33995282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 38407181 - 38407133
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||||| |||||||||  ||||||  |||||||||||||    
T  38407181 aaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 38407133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 1271 - 1320
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 67  Q
    ||||||||||||||||||| |||||| |||||||||| || |||||||||    
T  1271 aaattactcgtgtgcctcagccttatgcaatgtgtcagcagcaattctca 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 3865 - 3820
Alignment:
Q  21 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  3865 ttacttgtgtgcctcaaccttatccaatttgtcaacatcaattctc 3820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 20204 - 20252
Alignment:
Q  18 aaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 66  Q
    |||||||||||||| |||| |||||| |||||||| |||| ||||||||    
T  20204 aaattactcgtgtgtctcagccttatgcaatgtgtaaacatcaattctc 20252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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