View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14906_high_8 (Length: 288)

Name: NF14906_high_8
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14906_high_8
NF14906_high_8
[»] chr1 (15 HSPs)
chr1 (17-164)||(2973218-2973365)
chr1 (207-288)||(18343533-18343620)
chr1 (207-288)||(29205205-29205291)
chr1 (246-288)||(424406-424448)
chr1 (246-288)||(28678245-28678287)
chr1 (246-288)||(42490857-42490899)
chr1 (207-256)||(7995729-7995777)
chr1 (215-287)||(15791604-15791675)
chr1 (246-288)||(27534663-27534705)
chr1 (242-288)||(32784068-32784114)
chr1 (246-288)||(33487145-33487187)
chr1 (207-256)||(28678292-28678340)
chr1 (251-288)||(33939117-33939154)
chr1 (215-259)||(13488685-13488729)
chr1 (208-284)||(21326410-21326485)
[»] chr4 (13 HSPs)
chr4 (207-288)||(478126-478206)
chr4 (207-288)||(29922757-29922840)
chr4 (207-288)||(43244496-43244579)
chr4 (207-287)||(22757017-22757099)
chr4 (207-288)||(24611914-24611994)
chr4 (246-286)||(5814311-5814351)
chr4 (246-286)||(6911644-6911684)
chr4 (246-288)||(24825613-24825655)
chr4 (244-288)||(29268892-29268936)
chr4 (246-288)||(8712494-8712536)
chr4 (210-287)||(25658090-25658172)
chr4 (207-288)||(39837517-39837600)
chr4 (246-286)||(30202002-30202042)
[»] chr2 (16 HSPs)
chr2 (207-288)||(25067777-25067858)
chr2 (207-288)||(12704610-12704693)
chr2 (208-284)||(7640458-7640533)
chr2 (207-287)||(36867931-36868013)
chr2 (207-288)||(5754211-5754294)
chr2 (212-287)||(34416992-34417066)
chr2 (246-288)||(32015184-32015226)
chr2 (246-288)||(43474243-43474285)
chr2 (207-288)||(20561247-20561328)
chr2 (207-288)||(22597056-22597141)
chr2 (246-288)||(7073063-7073105)
chr2 (246-288)||(11937974-11938016)
chr2 (207-288)||(12891204-12891293)
chr2 (246-288)||(13879129-13879171)
chr2 (246-288)||(14019254-14019296)
chr2 (246-288)||(38535420-38535462)
[»] scaffold0536 (1 HSPs)
scaffold0536 (212-288)||(2831-2906)
[»] chr5 (8 HSPs)
chr5 (207-288)||(17331247-17331334)
chr5 (208-288)||(29097713-29097795)
chr5 (207-288)||(7771921-7772001)
chr5 (207-288)||(17096357-17096437)
chr5 (246-286)||(26295175-26295215)
chr5 (246-288)||(6281008-6281050)
chr5 (245-279)||(17687176-17687210)
chr5 (249-286)||(43493839-43493876)
[»] chr8 (14 HSPs)
chr8 (208-288)||(1810342-1810421)
chr8 (246-288)||(14600821-14600863)
chr8 (208-286)||(9501513-9501593)
chr8 (208-284)||(8054910-8054985)
chr8 (245-288)||(37612616-37612659)
chr8 (246-288)||(2025332-2025374)
chr8 (246-288)||(10147910-10147952)
chr8 (246-288)||(11161846-11161888)
chr8 (245-286)||(10334137-10334178)
chr8 (246-286)||(31308106-31308146)
chr8 (246-288)||(7583887-7583929)
chr8 (246-288)||(24699794-24699836)
chr8 (246-288)||(24791291-24791333)
chr8 (246-288)||(31407871-31407913)
[»] chr7 (12 HSPs)
chr7 (207-287)||(21990587-21990666)
chr7 (207-288)||(6667316-6667401)
chr7 (207-258)||(21954969-21955019)
chr7 (209-288)||(28665027-28665105)
chr7 (246-288)||(41287921-41287963)
chr7 (210-288)||(15674740-15674820)
chr7 (246-288)||(24988469-24988511)
chr7 (249-287)||(45457672-45457710)
chr7 (246-288)||(46026144-46026186)
chr7 (207-256)||(11832938-11832986)
chr7 (246-287)||(42603885-42603926)
chr7 (246-286)||(3266346-3266386)
[»] chr6 (10 HSPs)
chr6 (207-286)||(6419975-6420059)
chr6 (205-288)||(12481485-12481574)
chr6 (246-288)||(23654214-23654256)
chr6 (207-256)||(23654163-23654212)
chr6 (246-288)||(21507923-21507965)
chr6 (207-288)||(8693775-8693858)
chr6 (207-288)||(15590194-15590277)
chr6 (246-288)||(4921997-4922039)
chr6 (246-287)||(35220019-35220060)
chr6 (208-284)||(19759725-19759800)
[»] chr3 (14 HSPs)
chr3 (207-288)||(39610127-39610210)
chr3 (205-256)||(33637336-33637387)
chr3 (205-256)||(48652604-48652655)
chr3 (207-288)||(32080877-32080964)
chr3 (245-288)||(53155553-53155596)
chr3 (207-288)||(40883992-40884066)
chr3 (246-288)||(48400863-48400905)
chr3 (207-288)||(14585382-14585468)
chr3 (246-288)||(1075016-1075058)
chr3 (210-256)||(11818990-11819036)
chr3 (246-288)||(13702095-13702137)
chr3 (246-288)||(31462869-31462911)
chr3 (246-288)||(36691922-36691964)
chr3 (255-287)||(19861401-19861433)
[»] scaffold0312 (1 HSPs)
scaffold0312 (246-288)||(6101-6143)
[»] scaffold0155 (1 HSPs)
scaffold0155 (246-288)||(35046-35088)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 2973365 - 2973218
Alignment:
Q  17 ttgggattaaaattgatttgattcaaacttttcatatattcaatttccaatttacaggatcctagtcccatggagatgcaagtttgattttattgctttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  2973365 ttgggattaaaattgatttgattcaaacttttcatatattcaatttccaatttacaggatcctggtcccacggagatgcaagtttgattttattgctttc 2973266  T
Q  117 cctcgttaatgggaggaaaaaacattgttataatgaggaaaactaccg 164  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  2973265 cctcattaatgggaggaaaaaacattgttataatgaggaaaactaccg 2973218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 18343533 - 18343620
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgtt------agagaggtgatttagggtcaattttgacc 288  Q
    |||||| |||||||||||||||||||| ||| | |||||||||||||||||||      |||| ||||||||||| ||||||||||||    
T  18343533 ctctctcctctccttctcaaaccctagtcgttgctccctttcttcttcttgttgttgtcagaggggtgatttaggatcaattttgacc 18343620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 29205205 - 29205291
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcg---ttccctt--tcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| |||||   ||  |||  |||||||||| |||||  ||||||||||||||||||||||||    
T  29205205 ctctcttctctccttctcaaaccctagccgtcgcccttttcttcgtcttcttctttttagacgggtgatttagggtcaattttgacc 29205291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 424448 - 424406
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  424448 ttcttcttcttgtcagaggggtgatttagggtcaattttgacc 424406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 28678287 - 28678245
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  28678287 ttcttcttctttttagaggggtgatttagggtcaattttgacc 28678245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 42490857 - 42490899
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  42490857 ttcttcttcttgtcagagaggtgatttagggtcaagtttgacc 42490899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 7995777 - 7995729
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttctt 256  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||||||    
T  7995777 ctctcttctctccttctcaaatcttagacgtcg-tccctttcttcttctt 7995729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 15791675 - 15791604
Alignment:
Q  215 tctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    ||||||||||||||||||| |||| | | |||||||||||||||  ||| | ||||||||| |||||||||||    
T  15791675 tctccttctcaaaccctagtcgtcat-ctctttcttcttcttgtcggagggctgatttaggatcaattttgac 15791604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 27534663 - 27534705
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| | ||||||||||||||||||||||    
T  27534663 ttcttcttcttgtcagagggatgatttagggtcaattttgacc 27534705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 32784068 - 32784114
Alignment:
Q  242 ccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||| | | || ||||||||||||||||||||||||    
T  32784068 ccctttcttcttcttttcaaaggggtgatttagggtcaattttgacc 32784114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 33487187 - 33487145
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  33487187 ttcttcttcttttcagaggggtgatttagggtcaattttgacc 33487145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 28678340 - 28678292
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttctt 256  Q
    ||||||||||||||||||||||||||| ||||   |||||||||||||||    
T  28678340 ctctcttctctccttctcaaaccctagccgtc-acccctttcttcttctt 28678292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 33939154 - 33939117
Alignment:
Q  251 cttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  33939154 cttctttttagaggggtgatttagggtcaattttgacc 33939117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 13488729 - 13488685
Alignment:
Q  215 tctccttctcaaaccctagacgtcgttccctttcttcttcttgtt 259  Q
    ||||||||||||||| ||| |||||  ||||||||||||||||||    
T  13488729 tctccttctcaaaccttagccgtcgccccctttcttcttcttgtt 13488685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 21326410 - 21326485
Alignment:
Q  208 tctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaatttt 284  Q
    ||||||||||| |||||||||||||| ||||  |  |||||||||| | ||| ||| ||||||||||| ||||||||    
T  21326410 tctcttctctctttctcaaaccctagccgtcact-tctttcttcttttcgttggaggggtgatttaggatcaatttt 21326485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 478206 - 478126
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| ||||   ||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  478206 ctctcttctctccttctcaaaccctagccgtcac-ccctttcttcttctttttagaggggtgatttatggtcaattttgacc 478126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 29922757 - 29922840
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctt--tcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||| |||||| ||||||||||||||| ||||   || ||  |||||||||||| |||||||||||||||||||||||||||||    
T  29922757 ctcttttctcttcttctcaaaccctagccgtcacccctttcttcttcttcttgtcagagaggtgatttagggtcaattttgacc 29922840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 43244579 - 43244496
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttc---ttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||| |||||||||||||| ||||  ||| ||||||||||   || |||||| ||||||||||||||||||||||||    
T  43244579 ctctcttctctctttctcaaaccctagccgtc-atccttttcttcttcttttttttagaggggtgatttagggtcaattttgacc 43244496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 22757017 - 22757099
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgtt---agagaggtgatttagggtcaattttgac 287  Q
    ||||||||||||||||||||||||||| ||||   || |||||||||||| ||   |||| |||||||||||||||||||||||    
T  22757017 ctctcttctctccttctcaaaccctagccgtc-acccttttcttcttcttcttttcagaggggtgatttagggtcaattttgac 22757099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 24611994 - 24611914
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||| ||||| ||| ||||| ||  |||||||||||| |||||| ||||||||| ||||||||| ||||    
T  24611994 ctctcttctctccttcttaaaccttagtcgtcgctca-tttcttcttcttcttagaggggtgatttatggtcaatttagacc 24611914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 5814311 - 5814351
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  5814311 ttcttcttcttgttagggaggtgatttagggtcaattttga 5814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 6911644 - 6911684
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  6911644 ttcttcttcttgttagaggggtgatttagggtcaattttga 6911684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 24825613 - 24825655
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  24825613 ttcttcttcttgttagaggggtgatttaggatcaattttgacc 24825655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 29268936 - 29268892
Alignment:
Q  244 ctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||    
T  29268936 ctttcttcttcttgtcagaggggtgatttaaggtcaattttgacc 29268892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 8712494 - 8712536
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| ||| || ||||||||||||||||||||||||    
T  8712494 ttcttcttctttttacaggggtgatttagggtcaattttgacc 8712536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 25658090 - 25658172
Alignment:
Q  210 tcttctctccttctcaaaccctagacgtcg-----ttccctttcttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    |||||||||||||||||||||||| ||||      |||   ||||||||||| |||||| ||||||||||||| |||||||||    
T  25658090 tcttctctccttctcaaaccctagccgtcacccttttcttcttcttcttctttttagaggggtgatttagggttaattttgac 25658172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 39837517 - 39837600
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgtt---agagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||||||||||||| |||| ||||   || |||||||||||| ||   |||| |||||||||| |||||||||||||    
T  39837517 ctctcttctctccttctcaaacactagtcgtc-acccttttcttcttcttcttttcagaggggtgatttagcgtcaattttgacc 39837600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 30202002 - 30202042
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    ||||||||||||| |||| ||||||||| ||||||||||||    
T  30202002 ttcttcttcttgtcagaggggtgatttaaggtcaattttga 30202042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 25067777 - 25067858
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||| ||||| ||   ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  25067777 ctctcttctctctttctcgaattgtagccgtcgccccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 25067858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 12704610 - 12704693
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccct----ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| ||||   ||||    ||||||||||| |||||| ||||||||||||||||||||||||    
T  12704610 ctctcttctctccttctcaaaccctagtcgtc--acccttttcttcttcttctttttagaggggtgatttagggtcaattttgacc 12704693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 7640533 - 7640458
Alignment:
Q  208 tctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaatttt 284  Q
    |||||||||||||||||||||||||| ||||  | ||||||||||| | ||| ||| ||||||||||||||||||||    
T  7640533 tctcttctctccttctcaaaccctagccgtcact-cctttcttcttttcgttggaggggtgatttagggtcaatttt 7640458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 36867931 - 36868013
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcg---ttccctttcttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    ||||||||||||||||||||||||||| ||||    ||| ||| |||||||||  ||||| |||||||||||||||||||||||    
T  36867931 ctctcttctctccttctcaaaccctagccgtcaccattctctt-cttcttctttctagaggggtgatttagggtcaattttgac 36868013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 5754211 - 5754294
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctt--tcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||| |||||||||||||| |||| |    ||  |||||||||| |||||| ||||||||||||||||||||||||    
T  5754211 ctctcttctctcattctcaaaccctagccgtcatcattttcttcttcttctttttagaggggtgatttagggtcaattttgacc 5754294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 34417066 - 34416992
Alignment:
Q  212 ttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    |||||||||||||||||||||  ||||  ||| ||||| |||||| |||||| ||||||||| |||||||||||||    
T  34417066 ttctctccttctcaaaccctaaccgtcactcc-tttctacttctttttagaggggtgatttaaggtcaattttgac 34416992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 32015184 - 32015226
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  32015184 ttcttctttttgttagaggggtgatttagggtcaattttgacc 32015226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 43474285 - 43474243
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  43474285 ttcttcttctttttagaggggtgatttagggtcaattttgacc 43474243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 20561328 - 20561247
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||| |||||||||||||||||| ||||   |  ||| |||||||  | |||| ||||||||||||||||||||||||    
T  20561328 ctctcttccctccttctcaaaccctagccgtcacccttttttttcttctgttcagaggggtgatttagggtcaattttgacc 20561247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 22597056 - 22597141
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttc------ttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| ||||   ||||||||||      ||||||| |||| ||||||||| ||||||||||||||    
T  22597056 ctctcttctctccttctcaaaccctagtcgtc--accctttcttcttctttttcttgtcagaggggtgatttaaggtcaattttgacc 22597141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 7073105 - 7073063
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  7073105 ttcttcttcttttcagaggggtgatttagggtcaattttgacc 7073063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 11938016 - 11937974
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  11938016 ttcttcttcttttcagaggggtgatttagggtcaattttgacc 11937974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 12891293 - 12891204
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgtt---------agagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| ||||   ||||||||||||||| ||         |||| ||||||||||||||||||||||||    
T  12891293 ctctcttctctccttctcaaaccctagtcgtc-acccctttcttcttcttcttcttcttttcagaggggtgatttagggtcaattttgacc 12891204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 13879171 - 13879129
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| | ||||||||||||||||||||||    
T  13879171 ttcttcttcttgtcagagggatgatttagggtcaattttgacc 13879129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 14019296 - 14019254
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| | ||||||||||||||||||||||    
T  14019296 ttcttcttcttgtcagagggatgatttagggtcaattttgacc 14019254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 38535462 - 38535420
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  38535462 ttcttcttcttttcagaggggtgatttagggtcaattttgacc 38535420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 2831 - 2906
Alignment:
Q  212 ttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||| ||||||||||||||| ||||   |||||||||||||||||||||| ||||||||||||||||||||||||    
T  2831 ttctcttcttctcaaaccctagtcgtcac-ccctttcttcttcttgttagaggggtgatttagggtcaattttgacc 2906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 17331247 - 17331334
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttc------ttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||      |||| |||| ||||||||||||||||||||||||    
T  17331247 ctctcttctctccttctcaaaccctagccgtcgccccctttcttcttcttcttgttgtcagaggggtgatttagggtcaattttgacc 17331334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 29097713 - 29097795
Alignment:
Q  208 tctcttctctccttctcaaaccctagacgtcgttccctt--tcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||||||||||||||||| |||||  || ||  ||||||||||||   || ||||||||||||||||||||||||    
T  29097713 tctcttctctccttctcaaaccctagtcgtcgaccctttcttcttcttcttgtcctaggggtgatttagggtcaattttgacc 29097795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 7772001 - 7771921
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||  |||||||||  |||   || |||||||||||| |||||| ||||||||||||||||||||||||    
T  7772001 ctctcttctctccttcctaaaccctagctgtcac-ccttttcttcttctttttagaggggtgatttagggtcaattttgacc 7771921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 17096437 - 17096357
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||| |||||| |||||||||||||||  |||   || |||||||||||||| |||| ||||||||||||||||||||||||    
T  17096437 ctcttttctcttcttctcaaaccctagttgtcac-ccatttcttcttcttgtcagaggggtgatttagggtcaattttgacc 17096357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 26295215 - 26295175
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  26295215 ttcttcttcattttagagaggtgatttagggtcaattttga 26295175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 6281008 - 6281050
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||    
T  6281008 ttcttcttctttttagaggggtgatttatggtcaattttgacc 6281050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 17687176 - 17687210
Alignment:
Q  245 tttcttcttcttgttagagaggtgatttagggtca 279  Q
    ||||||||||||||||||| |||||||||||||||    
T  17687176 tttcttcttcttgttagaggggtgatttagggtca 17687210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 43493839 - 43493876
Alignment:
Q  249 ttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  43493839 ttcttctttttagaggggtgatttagggtcaattttga 43493876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 1810421 - 1810342
Alignment:
Q  208 tctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||| |||||||| |||||||||| ||||   || |||||||||||| |||||| ||||||||||||||||||||||||    
T  1810421 tctcttatctccttcccaaaccctagtcgtcac-ccttttcttcttctttttagaggggtgatttagggtcaattttgacc 1810342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 14600863 - 14600821
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  14600863 ttctttttcttgttagagaggtgatttagggtcaattttgacc 14600821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 9501513 - 9501593
Alignment:
Q  208 tctcttctctccttctcaaaccctagacgtcgttccct--ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    |||||||||||||||||||||||||| |||| | |  |  ||||||||||| ||| || ||||||||||||||||||||||    
T  9501513 tctcttctctccttctcaaaccctagccgtcatccttttcttcttcttctttttaaagtggtgatttagggtcaattttga 9501593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 8054985 - 8054910
Alignment:
Q  208 tctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaatttt 284  Q
    |||||| ||||||||||||||||||| ||||  ||| ||||||||| | ||| ||| ||||||||||||||||||||    
T  8054985 tctcttatctccttctcaaaccctagccgtcactcc-tttcttcttttcgttggaggggtgatttagggtcaatttt 8054910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 37612616 - 37612659
Alignment:
Q  245 tttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  37612616 tttcttcttctttttagaggggtgatttagggtcaattttgacc 37612659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 2025374 - 2025332
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  2025374 ttcttcttcttgttagaggggtgatttatggtcaattttgacc 2025332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 10147910 - 10147952
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  10147910 ttcttcttcatgttagaggggtgatttagggtcaattttgacc 10147952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 11161846 - 11161888
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  11161846 ttcttcttcttgttagaggggtaatttagggtcaattttgacc 11161888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 10334137 - 10334178
Alignment:
Q  245 tttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  10334137 tttcctcttcttgttagagagatgatttagggtcaattttga 10334178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 31308106 - 31308146
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  31308106 ttcttcttcttgttagaggggtgatttaaggtcaattttga 31308146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 7583929 - 7583887
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||    
T  7583929 ttcttcttcttgtcagaggggtgatttaggatcaattttgacc 7583887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 24699794 - 24699836
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||  ||||||||||||||||||||||||    
T  24699794 ttcttcttcttgtcagaagggtgatttagggtcaattttgacc 24699836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 24791333 - 24791291
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||    
T  24791333 ttcttcttctttttagaggggtgatttatggtcaattttgacc 24791291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 31407913 - 31407871
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||| || |||||| ||||||||||||||||||||||||    
T  31407913 ttcttcttatttttagaggggtgatttagggtcaattttgacc 31407871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 21990587 - 21990666
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    ||||||||||||||||||||||||||| ||||   ||||||||  ||||| | |||| |||||||||||||||||||||||    
T  21990587 ctctcttctctccttctcaaaccctagccgtc-acccctttctctttcttttcagaggggtgatttagggtcaattttgac 21990666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 6667316 - 6667401
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgt----cgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| |||    | |||   ||||||||||| ||||||  |||||||||||||||||||||||    
T  6667316 ctctcttctctccttctcaaaccctagccgtcaccctttcttcttcttcttctttttagaggagtgatttagggtcaattttgacc 6667401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 21955019 - 21954969
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgt 258  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  21955019 ctctcttctctccttctcaaaccctagtcgtcggt-cctttcttcttcttgt 21954969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 28665105 - 28665027
Alignment:
Q  209 ctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||| ||||||||||||   ||||   ||||||||||||||||| |||  ||||||||||||||||||||||||    
T  28665105 ctcttctctcattctcaaaccctgaccgtcac-ccctttcttcttcttgtcagatgggtgatttagggtcaattttgacc 28665027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 41287921 - 41287963
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  41287921 ttcttcttcttcttagaggggtgatttagggtcaattttgacc 41287963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 15674820 - 15674740
Alignment:
Q  210 tcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgtt---agagaggtgatttagggtcaattttgacc 288  Q
    ||||||||| |||||||||||||| ||||   || |||||||||||| ||   |||| ||||||||||||||||||||||||    
T  15674820 tcttctctcgttctcaaaccctagtcgtc-acccttttcttcttcttcttttcagaggggtgatttagggtcaattttgacc 15674740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 24988511 - 24988469
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||    
T  24988511 ttcttcttcttgtcagaggggtgattcagggtcaattttgacc 24988469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 45457710 - 45457672
Alignment:
Q  249 ttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  45457710 ttcttctttttagaggggtgatttagggtcaattttgac 45457672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 46026186 - 46026144
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  46026186 ttcttcttcttttcagaggggtgatttagggtcaattttgacc 46026144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 11832938 - 11832986
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttctt 256  Q
    ||||||||||||||||||||||||||| ||||  || |||||||||||||    
T  11832938 ctctcttctctccttctcaaaccctagccgtc-atctctttcttcttctt 11832986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 42603926 - 42603885
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    ||||||||||| |||||| ||||||||| |||||||||||||    
T  42603926 ttcttcttctttttagagcggtgatttatggtcaattttgac 42603885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 3266346 - 3266386
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    ||||||||||||| |||| ||||||||| ||||||||||||    
T  3266346 ttcttcttcttgtcagaggggtgatttatggtcaattttga 3266386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 6420059 - 6419975
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccct-----ttcttcttcttgttagagaggtgatttagggtcaattttga 286  Q
    ||||||||||||||||||||||||||| ||||   ||||     ||||||||||||| |||| ||||||||||||||||||||||    
T  6420059 ctctcttctctccttctcaaaccctagccgtcacccccttcttcttcttcttcttgtcagaggggtgatttagggtcaattttga 6419975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 288
Target Start/End: Complemental strand, 12481574 - 12481485
Alignment:
Q  205 cactctcttctctccttctcaaaccctagacgtcgttccctttcttct------tcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||||| |||||  | |||||||||      |||||| |||| ||||||||||| ||||||||||||    
T  12481574 cactctcttctctccttctcaaaccctagccgtcgccctctttcttcttcttcttcttgtcagaggggtgatttaggatcaattttgacc 12481485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 23654214 - 23654256
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  23654214 ttcttcttcttgtcagagaggtgatttagggtcaattttgacc 23654256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 23654163 - 23654212
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttctt 256  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  23654163 ctctcttctctccttctcaaaccctagccgtcgccccctttcttcttctt 23654212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 21507965 - 21507923
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  21507965 ttcttcttctttttagaggggtgatttagggtcaattttgacc 21507923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 8693858 - 8693775
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccct----ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||||||||||||| |||| ||||   ||||    ||||||||||| |||||| ||||||||| ||||||||||||||    
T  8693858 ctctcttctctccttctcaaactctagccgtc--acccttttcttcttcttctttttagaggggtgatttaaggtcaattttgacc 8693775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 15590277 - 15590194
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccc--tttcttcttcttgtt---agagaggtgatttagggtcaattttgacc 288  Q
    ||||||| |||||||||||||||||||   ||||| ||  |||||||||||| ||   |||| ||||||||||||||||||||||||    
T  15590277 ctctcttatctccttctcaaaccctag---tcgttaccattttcttcttcttcttttcagaggggtgatttagggtcaattttgacc 15590194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 4922039 - 4921997
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||| |||| || ||||||||||||||||||||||||    
T  4922039 ttcttcttctcgttaaaggggtgatttagggtcaattttgacc 4921997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 35220060 - 35220019
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgac 287  Q
    ||||||||||| || ||| |||||||||||||||||||||||    
T  35220060 ttcttcttcttcttggaggggtgatttagggtcaattttgac 35220019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 19759725 - 19759800
Alignment:
Q  208 tctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaatttt 284  Q
    ||||||||||||||||||||| || | ||||  ||| ||||||||| | ||  ||| ||||||||||||||||||||    
T  19759725 tctcttctctccttctcaaactcttgccgtcactcc-tttcttcttttcgtcggaggggtgatttagggtcaatttt 19759800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 39610127 - 39610210
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccct--ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||| |||||||||||||||||||||||||||   || |  ||||||||||||| |||| ||||||||| ||||||||||||||    
T  39610127 ctcttttctctccttctcaaaccctagacgtcacccctttcttcttcttcttgtcagaggggtgatttatggtcaattttgacc 39610210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 33637336 - 33637387
Alignment:
Q  205 cactctcttctctccttctcaaaccctagacgtcgttccctttcttcttctt 256  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  33637336 cactctcttctctccttctcaaaccctagccgtcgccccctttcttcttctt 33637387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 48652655 - 48652604
Alignment:
Q  205 cactctcttctctccttctcaaaccctagacgtcgttccctttcttcttctt 256  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  48652655 cactctcttctctccttctcaaaccctagccgtcgccccctttcttcttctt 48652604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 32080964 - 32080877
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttc------ttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| |||||  || ||||||||||      |||| |||  ||||||||||||||||||||||||    
T  32080964 ctctcttctctccttctcaaaccctagccgtcgccccatttcttcttcttcttgttgtcagatgggtgatttagggtcaattttgacc 32080877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 53155596 - 53155553
Alignment:
Q  245 tttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  53155596 tttcttcttctttttagaggggtgatttagggtcaattttgacc 53155553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 40884066 - 40883992
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcgttccctttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| ||||| |||| |||||||| |      || ||||||||||||||||||||||||    
T  40884066 ctctcttctctccttctcaaaccctagtcgtcgctccc-ttcttctttt------aggggtgatttagggtcaattttgacc 40883992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 48400863 - 48400905
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  48400863 ttcttcttctttttagaggggtgatttagggtcaattttgacc 48400905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 14585382 - 14585468
Alignment:
Q  207 ctctcttctctccttctcaaaccctagacgtcg---ttccctt--tcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||||||||||||||||| |||||   ||  |||  |||||||||| | |||| |||||||||| |||||||||||||    
T  14585382 ctctcttctctccttctcaaaccctagtcgtcgcccttttcttcgtcttcttcttttcagaggggtgatttagagtcaattttgacc 14585468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 1075058 - 1075016
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||    
T  1075058 ttcttcttcttgtcagaggggtgatttatggtcaattttgacc 1075016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 11818990 - 11819036
Alignment:
Q  210 tcttctctccttctcaaaccctagacgtcgttccctttcttcttctt 256  Q
    |||||||||||||||||||||||| ||||   |||||||||||||||    
T  11818990 tcttctctccttctcaaaccctagccgtcaccccctttcttcttctt 11819036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 13702137 - 13702095
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  13702137 ttcttcttcttttcagaggggtgatttagggtcaattttgacc 13702095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 31462911 - 31462869
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  31462911 ttcttcttcttttcagaggggtgatttagggtcaattttgacc 31462869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 36691964 - 36691922
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||| |||||||| |||| ||||||||||||||||||||||||    
T  36691964 ttctccttcttgtcagaggggtgatttagggtcaattttgacc 36691922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 19861433 - 19861401
Alignment:
Q  255 ttgttagagaggtgatttagggtcaattttgac 287  Q
    |||| ||||||||||||||||||||||||||||    
T  19861433 ttgtcagagaggtgatttagggtcaattttgac 19861401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 6101 - 6143
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  6101 ttcttcttcttgtcagaggggtgatttagggtcaattttgacc 6143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 35046 - 35088
Alignment:
Q  246 ttcttcttcttgttagagaggtgatttagggtcaattttgacc 288  Q
    |||||||| |||| | |||||||||||||||||||||||||||    
T  35046 ttcttctttttgtcaaagaggtgatttagggtcaattttgacc 35088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University