View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14906_high_9 (Length: 249)
Name: NF14906_high_9
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14906_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38448882 - 38449079
Alignment:
| Q |
1 |
aaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagtatctgctactaaaaggttgaactt |
100 |
Q |
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| T |
38448882 |
aaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagtatctgctactaaaaggttgaactt |
38448981 |
T |
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| Q |
101 |
gataggacctttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattgatgaatcgagatgttgaggaagcatg |
198 |
Q |
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| T |
38448982 |
gataggacctttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaatggatgaatcgagatgttgaggaagcatg |
38449079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 38440567 - 38440691
Alignment:
| Q |
75 |
gtatctgctactaaaaggttgaacttgataggacct-ttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattga |
173 |
Q |
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| T |
38440567 |
gtatctgctgctacaaggttgaacttgataggaccccttggtgcagcattgttgcaacatcaagttgctcctattgctgaagttatattagaaaaatgga |
38440666 |
T |
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| Q |
174 |
tgaatcgagatgttgaggaagcatg |
198 |
Q |
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| T |
38440667 |
tgaatcgtgatgttgaggaagcatg |
38440691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 38440418 - 38440467
Alignment:
| Q |
31 |
cttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
80 |
Q |
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| T |
38440418 |
cttctctcaaaacaatgagagattcttctatgaagttagggactgtatct |
38440467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 38449112 - 38449148
Alignment:
| Q |
205 |
ttgccatggttacttgttttcaagactgttttcatct |
241 |
Q |
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| T |
38449112 |
ttgccatggttacttgttttcaagactgttttcatct |
38449148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 38440729 - 38440761
Alignment:
| Q |
209 |
catggttacttgttttcaagactgttttcatct |
241 |
Q |
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| T |
38440729 |
catggttacttgttttcaagattgttttcatct |
38440761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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