View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14906_low_1 (Length: 634)

Name: NF14906_low_1
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14906_low_1
NF14906_low_1
[»] chr1 (1 HSPs)
chr1 (7-634)||(25574766-25575394)


Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 25575394 - 25574766
Alignment:
Q  7 ctcaccaatctgtgctctgcccacattctcctgggaattagctaaaagagaaccactagagtaatcttctttgtcatcctttctgtcatagccacaggaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25575394 ctcaccaatctgtgctctgcccacattctcctgggaattagctaaaagagaaccactagagtaatcttctttgtcatcctttctgtcatagccacaggaa 25575295  T
Q  107 ggtttgtagcgatcaaattccaaagtattcccattcccgcagtcagttgccttgccatgagttggctcggcccctctaccaatgcgaccctggttaggaa 206  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25575294 ggtctgtagcgatcaaattccaaagtattcccattcccgcagtcagttgccttgccatgagttggctcggcccctctaccaatgcgaccctggttaggaa 25575195  T
Q  207 caacatggccaccttcatctggaaagtctcttcgacgannnnnnnnn-ctccatcgcaatacttaaaaccatctcgacaatactccccctcttcaacaga 305  Q
    ||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25575194 caacatggccaccttcatctggaaagtctcttcgacgatttttttcttctccatcgcaatacttaaaaccatctcgacgatactccccctcttcaacaga 25575095  T
Q  306 ctcgcccctttcaacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatctgtcaaaaatcctctta 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25575094 ctcgcccctttcaacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatttgtcaaaaatcctctta 25574995  T
Q  406 ccttgcaactcataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagtt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25574994 ccttgcaactcataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagtt 25574895  T
Q  506 ccccacatatctttctacctttcaattctctcaaagctttctccgcatccgaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaac 605  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25574894 ccccacatatctttgtacctttcaattccctcaaagctttctccgcatccaaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaac 25574795  T
Q  606 attacaatgcccaaatctaccaaaaactc 634  Q
    ||||||| |||||||||||||||||||||    
T  25574794 attacaacgcccaaatctaccaaaaactc 25574766  T

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