View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14906_low_13 (Length: 216)
Name: NF14906_low_13
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14906_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9086516 - 9086723
Alignment:
| Q |
1 |
caagtttctccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattct |
100 |
Q |
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| T |
9086516 |
caagtttctccttaaacccacctgtgattgtttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattct |
9086615 |
T |
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| Q |
101 |
aacttgatcttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctgcaatatcatattaaaag |
200 |
Q |
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| T |
9086616 |
aacttgatcttctttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaccctgcaatatcatattaaaag |
9086715 |
T |
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| Q |
201 |
ttagaatt |
208 |
Q |
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|||||||| |
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| T |
9086716 |
ttagaatt |
9086723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 9125693 - 9125872
Alignment:
| Q |
9 |
tccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaacttgat |
108 |
Q |
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| T |
9125693 |
tccttaaacccactagtgattctttttatatcagaatatgaaaatctggcaggcttttgtgctctataatcctctaaaaacctatcaactctaacttgat |
9125792 |
T |
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| Q |
109 |
cttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctgcaata |
188 |
Q |
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| T |
9125793 |
cttcttctttttctctgaaatgtagataaatctttataaatgcaatggtgagcaaccccaataaaattgaacctgcaata |
9125872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 9070225 - 9070401
Alignment:
| Q |
9 |
tccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaacttgat |
108 |
Q |
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| T |
9070225 |
tccttaaatccactcgtgatcctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgat |
9070324 |
T |
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| Q |
109 |
cttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctgca |
185 |
Q |
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| T |
9070325 |
cttcttctttttctctgaaatgcagataaatcttaataaatacaatggtgcccattcccaatataattgaacctgca |
9070401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 8979509 - 8979689
Alignment:
| Q |
3 |
agtttctccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaa |
102 |
Q |
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||||| |||||||||||| |||||||||||||||||||||| | |||||||||| ||| | |||||||||| |||| ||||||||||| |||| ||||| |
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| T |
8979509 |
agtttttccttaaacccatttgtgattctttttatatcagcaaaagaaaatctagtaggttgttgtgctctataatcctctaaaaacttgtcaactctaa |
8979608 |
T |
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| Q |
103 |
cttgatcttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctg |
183 |
Q |
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| T |
8979609 |
cttgatcttcttctttttttctaaaatataaatagatcttaataaatataatggtaaccaaccccaaaacaattgaacctg |
8979689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 8862133 - 8862215
Alignment:
| Q |
27 |
attctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaacttgatc |
109 |
Q |
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| T |
8862133 |
attctttttatatcggcataagaaaatctagtaggtttttgtgctcgataatcctctaaaaacttatcaactctaatttgatc |
8862215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 8866030 - 8866090
Alignment:
| Q |
49 |
aaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaacttgatc |
109 |
Q |
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||||||||| ||| ||||| |||| | |||| |||||||||||||||| ||||| |||||| |
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| T |
8866030 |
aaaatctagtaggtttttgagctcgataatcctctaaaaacttatcaactctaatttgatc |
8866090 |
T |
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