View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14906_low_9 (Length: 254)

Name: NF14906_low_9
Description: NF14906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14906_low_9
NF14906_low_9
[»] chr2 (15 HSPs)
chr2 (1-242)||(13136654-13136905)
chr2 (4-134)||(43722904-43723035)
chr2 (5-134)||(6825974-6826105)
chr2 (1-135)||(5104952-5105084)
chr2 (4-134)||(3874482-3874622)
chr2 (53-134)||(13972732-13972813)
chr2 (34-134)||(10599951-10600051)
chr2 (59-134)||(5665830-5665905)
chr2 (65-134)||(38014636-38014705)
chr2 (65-135)||(31430569-31430639)
chr2 (53-134)||(16788389-16788469)
chr2 (65-134)||(25873203-25873272)
chr2 (65-134)||(25869835-25869904)
chr2 (65-110)||(25139971-25140016)
chr2 (94-134)||(40780658-40780698)
[»] chr5 (21 HSPs)
chr5 (8-134)||(30065562-30065689)
chr5 (4-112)||(2836702-2836811)
chr5 (52-132)||(39191333-39191413)
chr5 (52-134)||(28788319-28788401)
chr5 (4-113)||(18031731-18031850)
chr5 (8-134)||(7270241-7270365)
chr5 (53-112)||(32837105-32837164)
chr5 (53-112)||(37214788-37214847)
chr5 (53-111)||(22937974-22938032)
chr5 (53-110)||(4100356-4100413)
chr5 (53-134)||(43490793-43490874)
chr5 (53-136)||(21827959-21828043)
chr5 (8-134)||(40916751-40916889)
chr5 (53-134)||(21336660-21336742)
chr5 (65-134)||(14016967-14017036)
chr5 (65-135)||(17747616-17747686)
chr5 (4-62)||(33551415-33551474)
chr5 (4-100)||(2837535-2837641)
chr5 (1-38)||(4100289-4100326)
chr5 (85-134)||(25329456-25329505)
chr5 (58-134)||(28442105-28442181)
[»] chr7 (14 HSPs)
chr7 (1-134)||(4694723-4694866)
chr7 (4-134)||(45287997-45288138)
chr7 (1-135)||(9865499-9865643)
chr7 (52-134)||(45291392-45291474)
chr7 (53-134)||(4596843-4596924)
chr7 (53-134)||(20081559-20081640)
chr7 (53-134)||(17729973-17730054)
chr7 (53-135)||(8276011-8276093)
chr7 (53-134)||(9080376-9080457)
chr7 (53-113)||(10344637-10344697)
chr7 (53-134)||(9273953-9274034)
chr7 (153-236)||(22620863-22620946)
chr7 (58-134)||(4542074-4542150)
chr7 (58-134)||(10431386-10431462)
[»] chr1 (10 HSPs)
chr1 (4-134)||(21019236-21019367)
chr1 (1-134)||(2404722-2404865)
chr1 (8-134)||(21108257-21108393)
chr1 (53-135)||(41059152-41059235)
chr1 (53-134)||(42021721-42021802)
chr1 (65-135)||(45961638-45961708)
chr1 (65-133)||(27537144-27537212)
chr1 (53-112)||(29644227-29644286)
chr1 (65-134)||(2793299-2793368)
chr1 (97-134)||(49147113-49147150)
[»] chr4 (26 HSPs)
chr4 (4-135)||(19819949-19820081)
chr4 (52-135)||(53010376-53010459)
chr4 (1-135)||(27677822-27677967)
chr4 (53-134)||(24044976-24045057)
chr4 (1-134)||(27691890-27692025)
chr4 (1-134)||(15430621-15430766)
chr4 (1-134)||(15437235-15437380)
chr4 (53-134)||(44164001-44164083)
chr4 (53-134)||(3718336-3718417)
chr4 (4-134)||(19826701-19826842)
chr4 (4-134)||(52007300-52007431)
chr4 (53-113)||(40794213-40794273)
chr4 (53-112)||(14571048-14571107)
chr4 (4-134)||(35509201-35509320)
chr4 (53-134)||(12782106-12782187)
chr4 (53-113)||(21419000-21419060)
chr4 (65-135)||(29323978-29324048)
chr4 (65-134)||(44809835-44809904)
chr4 (53-134)||(27013229-27013311)
chr4 (65-129)||(34320775-34320839)
chr4 (53-112)||(5680491-5680550)
chr4 (58-134)||(15431164-15431240)
chr4 (58-134)||(15437778-15437854)
chr4 (83-134)||(49269735-49269786)
chr4 (58-134)||(3798720-3798796)
chr4 (1-30)||(44164108-44164137)
[»] chr3 (25 HSPs)
chr3 (1-134)||(10880776-10880919)
chr3 (4-134)||(53814971-53815112)
chr3 (1-135)||(29344629-29344774)
chr3 (53-134)||(34984677-34984758)
chr3 (4-134)||(41976321-41976461)
chr3 (53-136)||(16243164-16243247)
chr3 (17-114)||(43808898-43809003)
chr3 (53-141)||(54460360-54460448)
chr3 (4-134)||(20729345-20729477)
chr3 (53-126)||(54736769-54736842)
chr3 (53-133)||(9380012-9380092)
chr3 (53-112)||(16185575-16185634)
chr3 (53-112)||(35411699-35411758)
chr3 (53-134)||(3839790-3839874)
chr3 (57-134)||(19305470-19305547)
chr3 (53-112)||(31548573-31548632)
chr3 (65-134)||(19302295-19302364)
chr3 (1-46)||(34984607-34984653)
chr3 (4-58)||(6445521-6445577)
chr3 (58-134)||(10884018-10884094)
chr3 (58-134)||(23299477-23299553)
chr3 (58-134)||(538015-538091)
chr3 (58-134)||(6921890-6921966)
chr3 (4-59)||(54460460-54460517)
chr3 (94-134)||(49743785-49743825)
[»] scaffold0520 (1 HSPs)
scaffold0520 (1-134)||(4728-4880)
[»] chr6 (7 HSPs)
chr6 (43-135)||(28666086-28666177)
chr6 (1-136)||(10289184-10289329)
chr6 (53-135)||(9953035-9953117)
chr6 (53-100)||(13004434-13004481)
chr6 (64-113)||(20181294-20181343)
chr6 (64-113)||(22154648-22154697)
chr6 (97-135)||(12987037-12987075)
[»] scaffold0757 (1 HSPs)
scaffold0757 (8-134)||(4563-4700)
[»] chr8 (11 HSPs)
chr8 (4-134)||(12582218-12582358)
chr8 (4-134)||(5981083-5981220)
chr8 (53-135)||(45156837-45156919)
chr8 (56-112)||(5540917-5540973)
chr8 (53-112)||(14420886-14420945)
chr8 (71-134)||(18826771-18826834)
chr8 (54-134)||(30640505-30640587)
chr8 (4-58)||(17895377-17895433)
chr8 (53-135)||(19792925-19793009)
chr8 (52-110)||(25228039-25228096)
chr8 (70-134)||(10663011-10663075)
[»] scaffold0270 (3 HSPs)
scaffold0270 (8-134)||(923-1060)
scaffold0270 (53-110)||(4339-4396)
scaffold0270 (53-110)||(11469-11526)
[»] scaffold0005 (1 HSPs)
scaffold0005 (53-112)||(246269-246328)
[»] scaffold0015 (1 HSPs)
scaffold0015 (53-112)||(197264-197323)
[»] scaffold0381 (1 HSPs)
scaffold0381 (53-134)||(6472-6554)
[»] scaffold1993 (1 HSPs)
scaffold1993 (53-134)||(1045-1126)
[»] scaffold0080 (1 HSPs)
scaffold0080 (52-111)||(26277-26336)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 13136905 - 13136654
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagttttttcttgct---------gcttaatcttgcttgtgaattcaaaaat 90  Q
    ||||| |||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||         ||||||||||| ||||||| ||||||||    
T  13136905 tgtcatgtttttcagtaatcatgacacaatgctttttttcagcttcttcagttttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaat 13136806  T
Q  91 atcataaaaagactctaaaaataataaatgattgactgtcatcaggaaacatgtaatgtgaaaatgtaatgaatcaagatagttccattataataaaata 190  Q
    ||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||    
T  13136805 atcataaaatgactctaaaaataacaaatgactgactgtcattaggaaacatgtaatatgaaaatgtaatgaatcaagataggtccatcataataaaata 13136706  T
Q  191 ggccatgttatattagatgaagtcgtgtttttagaaggatctagagtgatga 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13136705 ggccatgttatattagatgaagtcgtgtttttagaaggatctagattgatga 13136654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 43723035 - 43722904
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgc-ctttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaaga 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43723035 cacgtttttcagtaatcgtgacacgatgctctttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaga 43722936  T
Q  103 ctctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||  ||||||||||||||||||    
T  43722935 ctctaaaaataacgaatgattgactgtcatca 43722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 6826105 - 6825974
Alignment:
Q  5 acgtttttcagtaatcgtgacacgatgccttttt--cagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaaga 102  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  6826105 acgtttttcagtaatcgtgacacgatgcctttttttcatcttcttcagttttttcttgatgcttaatcttgcttgtgaactcaaaaatatcataaaaaga 6826006  T
Q  103 ctctaaaaataataaatgattgactgtcatca 134  Q
    || |||| ||||  ||||||||||||||||||    
T  6826005 ctttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5105084 - 5104952
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaa 99  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5105084 tgtcacgtttttcagtaatcgtgacacgatcccctttttcagcttcttcagttttt-cttgctgcttaatcttgcttgtgaactcaaaaatatcataaaa 5104986  T
Q  100 agactctaaaaataataaatgattgactgtcatcag 135  Q
    | |||||||||  | | ||||| |||||||||||||    
T  5104985 aaactctaaaa--agtgaatgactgactgtcatcag 5104952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 3874622 - 3874482
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttttcttgct---------gcttaatcttgcttgtgaattcaaaaatatc 93  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||         ||||||||||| ||||||| |||||||||||    
T  3874622 cacgtttttcaataatcgtgacacgatgccctttttcagtttcttcaattttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatc 3874523  T
Q  94 ataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
     ||||||||||||||||||||| ||||| ||||||||||||    
T  3874522 ctaaaaagactctaaaaataatgaatgactgactgtcatca 3874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 13972732 - 13972813
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  13972732 ttttcttgctgcttaatcttgtttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 13972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 10600051 - 10599951
Alignment:
Q  34 tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatc 133  Q
    ||||||||||| |||   ||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| | ||||| |||||||||||    
T  10600051 tttttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagattctaaaaatagtgaatgactgactgtcatc 10599952  T
Q  134 a 134  Q
    |    
T  10599951 a 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 5665905 - 5665830
Alignment:
Q  59 tgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  5665905 tgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgactgtcatca 5665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 38014705 - 38014636
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  38014705 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 31430569 - 31430639
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| | |||||||||||    
T  31430569 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactaactgtcatcag 31430639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 16788469 - 16788389
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||| |||||||||||| |||||| |||||| |||||| ||||||||||  |||||| ||||||||||||    
T  16788469 ttttcttgttgcttaagcttgcttgtgaactcaaaattatcat-aaaagattctaaaaatagcaaatgactgactgtcatca 16788389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 25873272 - 25873203
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  25873272 ttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 25869904 - 25869835
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| ||| |||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  25869904 ttaaactttcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 25139971 - 25140016
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 110  Q
    |||| ||| |||||||| |||||||||||||||||| |||||||||    
T  25139971 ttaagcttacttgtgaactcaaaaatatcataaaaaaactctaaaa 25140016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 40780698 - 40780658
Alignment:
Q  94 ataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||||   ||||||||||||||||||    
T  40780698 ataaaaagactctaaaaatagcgaatgattgactgtcatca 40780658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 30065689 - 30065562
Alignment:
Q  8 tttttcagtaatcgtgacacgatgcctttttca-gcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactct 106  Q
    ||||| ||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30065689 ttttttagtaatcgtgacacgatgccttttttaagctttttcagttttttcttgttgcttaatcttgcttgtgaattcaaaaatatcataaaaagactct 30065590  T
Q  107 aaaaataataaatgattgactgtcatca 134  Q
    ||||||||  ||||| ||| ||||||||    
T  30065589 aaaaataacgaatgaatgattgtcatca 30065562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 2836811 - 2836702
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaag 101  Q
    ||||||||||||||||||||||||||| ||  |||||||| ||||||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||    
T  2836811 cacgtttttcagtaatcgtgacacgattcccttttttcagtttcttcagttttt-cttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaag 2836713  T
Q  102 actctaaaaat 112  Q
    |||||||||||    
T  2836712 actctaaaaat 2836702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 39191413 - 39191333
Alignment:
Q  52 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcat 132  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  39191413 tttttcttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 28788319 - 28788401
Alignment:
Q  52 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  28788319 tttttcttgctgcttaagcttgcttgtgaactaaaaaatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 18031850 - 18031731
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatc 93  Q
    ||||||||||||||||||||||||||| ||  |||||||| |||||||||||||        ||||||||||||| ||||||| |||| || ||||||||    
T  18031850 cacgtttttcagtaatcgtgacacgattccattttttcagtttcttcagtttttcttgcttttcttgctgcttaaacttgcttttgaactcgaaaatatc 18031751  T
Q  94 ataaaaagactctaaaaata 113  Q
    ||||||||||||||||||||    
T  18031750 ataaaaagactctaaaaata 18031731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 7270365 - 7270241
Alignment:
Q  8 tttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagtttttt-cttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactc 105  Q
    ||||||| |||| ||||||||||||| |||||||| |||||||||||||| ||||    ||  ||||||||||||| |||||||||||||||||||||||    
T  7270365 tttttcaataatagtgacacgatgccctttttcagtttcttcagtttttttcttg----tttttcttgcttgtgaactcaaaaatatcataaaaagactc 7270270  T
Q  106 taaaaataataaatgattgactgtcatca 134  Q
    ||||||||   |||||  |||||||||||    
T  7270269 taaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 32837164 - 32837105
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  32837164 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 32837105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 37214847 - 37214788
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37214847 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 37214788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 22937974 - 22938032
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaa 111  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22937974 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaa 22938032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 4100356 - 4100413
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 110  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  4100356 ttttcttgctgcttaatcttgcctgtgaactcaaaaatatcataaaaagactctaaaa 4100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 43490874 - 43490793
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  43490874 ttttcttgctgcttaagcttgtttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 43490793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 21827959 - 21828043
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatcagg 136  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||   ||||| ||||||||||||||    
T  21827959 ttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcagg 21828043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 40916751 - 40916889
Alignment:
Q  8 tttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatcat--- 95  Q
    ||||||||||||||||||||||| || |||||||| |||||| ||||||        ||||| ||||||| |||||||||||| |||||||||| ||       
T  40916751 tttttcagtaatcgtgacacgatcccctttttcagtttcttcggtttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatatgataaa 40916850  T
Q  96 aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||  |||||| ||||||||||||    
T  40916851 aaaaagactctaaaaatagcaaatgactgactgtcatca 40916889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 21336660 - 21336742
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||| |||||||||||| |||||||||| || |||||||||||||||||| | ||||| ||||||||||||    
T  21336660 ttttcttgttgcttaagcttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 14016967 - 14017036
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  14016967 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 17747686 - 17747616
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||| ||| ||| |||| |||||| ||||||||||||||||||||||||  |||||| |||||||||||||    
T  17747686 ttaagctttcttatgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcag 17747616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 33551474 - 33551415
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgat-gcctttttcagcttcttcagttttttcttgct 62  Q
    |||||||||||||||||||||||||||  |||||||||  ||||| ||||||||||||||    
T  33551474 cacgtttttcagtaatcgtgacacgatcccctttttcactttctttagttttttcttgct 33551415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 2837535 - 2837641
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcctttt--tcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatc 93  Q
    ||||||||||||||||||||||| ||| || |||  |||| |||||||||||||        | ||||||||||| |||||||||||| || ||||||||    
T  2837535 cacgtttttcagtaatcgtgacatgattccctttcttcagtttcttcagtttttcttgcttttattgctgcttaagcttgcttgtgaactccaaaatatc 2837634  T
Q  94 ataaaaa 100  Q
    |||||||    
T  2837635 ataaaaa 2837641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4100289 - 4100326
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgccttttt 38  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  4100289 tgtcacgtttttgagtaatcgtgacacgatcccttttt 4100326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 25329505 - 25329456
Alignment:
Q  85 aaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| ||||||||||||   ||||| ||||||||||||    
T  25329505 aaaaatatcataaaaaaactctaaaaatagcgaatgactgactgtcatca 25329456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 28442105 - 28442181
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| || |||||||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  28442105 ttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 28442181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4694866 - 4694723
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagttttttctt---------gctgcttaatcttgcttgtgaattcaaaaat 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||| ||||||||    
T  4694866 tgtcacgtttttcagtaatcgtgacacgatgccttttttcagcttcttcagttttttcttacttttcttgctgcttaatcttgcttgtgaactcaaaaat 4694767  T
Q  91 atcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| ||||||||||||||||| |||||| ||||| ||||||    
T  4694766 atcatagaaagactctaaaaataacaaatgactgactttcatca 4694723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 45287997 - 45288138
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagttttt---------tcttgctgcttaatcttgcttgtgaattcaaaaatat 92  Q
    |||||||||||||||| |||||||||||||||  |||||| |||||||| ||||         ||||||||||||| |||||||||||| ||||||||||    
T  45287997 cacgtttttcagtaattgtgacacgatgccttcttttcagtttcttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatat 45288096  T
Q  93 cataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  45288097 cataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 9865499 - 9865643
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaat 90  Q
    |||||||||||||| ||||||||||||||| |   |||||||  |||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  9865499 tgtcacgtttttcaataatcgtgacacgatcctcttttttcattttcttcagtttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaat 9865598  T
Q  91 atcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||||||||||||||||||||||   ||||| |||||||||||||    
T  9865599 atcataaaaagactctaaaaatagcgaatgactgactgtcatcag 9865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 45291392 - 45291474
Alignment:
Q  52 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  45291392 tttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 4596843 - 4596924
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  4596843 ttttcttgttgcttaatctttcttgtgagctcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 4596924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 20081559 - 20081640
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| | ||||| ||||||||||||    
T  20081559 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaacactctaaaaatagtgaatgactgactgtcatca 20081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 17730054 - 17729973
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| | || || ||||||||||||    
T  17730054 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 8276093 - 8276011
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||   |||||  ||||||||||||    
T  8276093 ttttcttgctgcttgagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatggaatgacagactgtcatcag 8276011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 9080457 - 9080376
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||||||  ||||| | ||||||||||    
T  9080457 ttttcttgctgcttaagcttgcttgtgaactcaaaaattacataaaaagactctaaaaataacgaatgactaactgtcatca 9080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 10344697 - 10344637
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 113  Q
    |||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||    
T  10344697 ttttcttgctgcttaagcttgcttgtgaactcaaaaatttcataagaagactctaaaaata 10344637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 9273953 - 9274034
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||| | |||||   ||||||  |||||||||||    
T  9273953 ttttcttggtgcttaagcttgcttgtgaactccaaaatatcataaaaagactttgaaaatgtgaaatgacggactgtcatca 9274034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 22620946 - 22620863
Alignment:
Q  153 aatgtaatgaatcaagatagttccattataataaaataggccatgttatattagatga--agtcgtgtttttagaaggatctagag 236  Q
    |||||||||||| ||||||| ||||||| |||| ||||| ||  ||||||||||| ||  |||| |||||||||||||||||||||    
T  22620946 aatgtaatgaattaagataggtccattagaatataatagccc--gttatattagaggatgagtcatgtttttagaaggatctagag 22620863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 4542150 - 4542074
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaa-gactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| |||||| |||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  4542150 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 4542074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 10431462 - 10431386
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaa-gactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| |||||| |||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  10431462 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 10431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 21019236 - 21019367
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaag 101  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||||| |||| ||| ||| ||||||||||||| |||||    
T  21019236 cacgtttttcagtaatcgtgacacgatgccctttttttagtttcttcagttttttcttgctgcttaagcttggttgcgaactcaaaaatatcat-aaaag 21019334  T
Q  102 actctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||   ||||| ||||||||||||    
T  21019335 actctaaaaatagcgaatgactgactgtcatca 21019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2404865 - 2404722
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagtttt---------ttcttgctgcttaatcttgcttgtgaattcaaaaat 90  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||| ||||||||    
T  2404865 tgtcacgtttttcagaaattgtgacacgatgccttttttcagcttcttcagttttatcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaat 2404766  T
Q  91 atcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    || ||||||||||||||||||||   ||||| ||||||||||||    
T  2404765 attataaaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 21108257 - 21108393
Alignment:
Q  8 tttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatcataa 97  Q
    ||||||| ||||||||||||||| ||  |||||||| |||||||||||||        |||||| |||||||||||||| ||| ||||||||||||||||    
T  21108257 tttttcaataatcgtgacacgatccccttttttcagtttcttcagtttttcttgcttttcttgcagcttaatcttgcttttgagttcaaaaatatcataa 21108356  T
Q  98 aaagactctaaaaataataaatgattgactgtcatca 134  Q
     ||||||||||||| |   ||||| ||||||||||||    
T  21108357 gaagactctaaaaagagcgaatgactgactgtcatca 21108393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 41059152 - 41059235
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||   ||||| |||||||||||||    
T  41059152 ttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcag 41059235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 42021802 - 42021721
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| ||||||||||| |||||||||||| |||  ||||| ||||||||||||||||||||   ||||||||||||||||||    
T  42021802 ttttattgctgcttaaacttgcttgtgaactcagtaatattataaaaagactctaaaaatagcgaatgattgactgtcatca 42021721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 45961638 - 45961708
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||| |||||||||||| |||||| |||||||| |||||||||||||||  |||||| |||||||||||||    
T  45961638 ttaagcttgcttgtgaactcaaaattatcataacaagactctaaaaatagcaaatgactgactgtcatcag 45961708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 27537144 - 27537212
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatc 133  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||||||  |||||| |||||||||||    
T  27537144 ttaagcttgcttgtgaactcaaaattatcataaaaagactataaaaatagcaaatgactgactgtcatc 27537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 29644227 - 29644286
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||| |||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||    
T  29644227 tttttttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctataaat 29644286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 2793368 - 2793299
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| |||||||||||| |||||| |||||| |||||||||||||||||| | || || ||||||||||||    
T  2793368 ttaaacttgcttgtgaactcaaaa-tatcattaaaaagactctaaaaatagtgaacgactgactgtcatca 2793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 49147150 - 49147113
Alignment:
Q  97 aaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  49147150 aaaagactctaaaaatagtgaatgattgactgtcatca 49147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 19820081 - 19819949
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaa-tatcataaaaag 101  Q
    ||||||||||||||||||||||||||| || ||||| || ||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  19820081 cacgtttttcagtaatcgtgacacgatccccttttttagtttcttcagttttt-cttgctacttaatcttgcttgtgaactcaaaaaatatcataaaaag 19819983  T
Q  102 actctaaaaataataaatgattgactgtcatcag 135  Q
    ||| ||||||||   ||||| |||||||||||||    
T  19819982 actttaaaaatagcgaatgactgactgtcatcag 19819949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 53010376 - 53010459
Alignment:
Q  52 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  53010376 tttttcttgctgcttaatcttacttgtgaactcaaaaatatcataaaaagactctaaaaataatgaatgactgactatcatcag 53010459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 27677822 - 27677967
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagtttttt--------cttgctgcttaatcttgcttgtgaattcaaaaat 90  Q
    |||||||||||||||||||||||||||| | ||  |||||||| ||||||||||||||        ||||||||||||||||| ||||||| ||||||||    
T  27677822 tgtcacgtttttcagtaatcgtgacacggtccccttttttcagtttcttcagttttttttgcttttcttgctgcttaatcttgattgtgaactcaaaaat 27677921  T
Q  91 atcat-aaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    ||||| |||||||||||||||||| | ||| | |||||||||||||    
T  27677922 atcataaaaaagactctaaaaatagtgaataactgactgtcatcag 27677967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 24044976 - 24045057
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||  ||||| ||||||||||||    
T  24044976 ttttcttgctgcttaatcttgtttgtgaactcaaaaatatcaaaaaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27691890 - 27692025
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aa 97  Q
    ||||||||||||||||||||||||||| || ||  |||||||| || |||    ||||||||||||||||||||||||||||||||||||||||| | ||    
T  27691890 tgtcacgtttttcagtaatcgtgacacaatccccttttttcagttt-ttcttgcttttcttgctgcttaatcttgcttgtgaattcaaaaatatcgtaaa 27691988  T
Q  98 aaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| | ||||| | | ||||||||    
T  27691989 aaagactctaaaaatagtgaatgactaattgtcatca 27692025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 15430621 - 15430766
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc---tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaa 89  Q
    ||||||||||||||||||| |||||||||| ||   |||||||| |||| ||||||||        ||||||||||||| |||||||||||| |||||||    
T  15430621 tgtcacgtttttcagtaattgtgacacgatccccgttttttcagtttctccagtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaa 15430720  T
Q  90 tatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| ||||||||||| |||||||  ||||| ||||||||||||    
T  15430721 tatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15430766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 15437235 - 15437380
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc---tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaa 89  Q
    ||||||||||||||||||| |||||||||| ||   |||||||| |||| ||||||||        ||||||||||||| |||||||||||| |||||||    
T  15437235 tgtcacgtttttcagtaattgtgacacgatccccgttttttcagtttctccagtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaa 15437334  T
Q  90 tatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| ||||||||||| |||||||  ||||| ||||||||||||    
T  15437335 tatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 44164083 - 44164001
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcata-aaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| ||||||||||||    
T  44164083 ttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 3718417 - 3718336
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||| | ||||| ||||||||||||    
T  3718417 ttttcttgttgcttaagcttgcttgtgaactcaaaaatatcataaaaatactctaaaaatagtgaatgagtgactgtcatca 3718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 19826842 - 19826701
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaa-tat 92  Q
    ||||||||||||||||||||||||||| ||  |||||||| |||||||||||||        ||||| ||||||||||| |||||||| ||||||| | |    
T  19826842 cacgtttttcagtaatcgtgacacgatccccttttttcagtttcttcagtttttcttgcttttcttgttgcttaatcttacttgtgaactcaaaaaattt 19826743  T
Q  93 cataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||||||||   ||||| ||||||||||||    
T  19826742 cataaaaagactctaaaaatagcgaatgactgactgtcatca 19826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 52007300 - 52007431
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcctttt--tcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaag 101  Q
    ||||||||| ||| ||||||||| ||| || |||  |||| |||||| | ||||||||||||||||| ||||||| |||| |||| ||||||||||||||    
T  52007300 cacgttttttagttatcgtgacatgattccctttcttcagtttcttc-gatttttcttgctgcttaagcttgcttttgaactcaacaatatcataaaaag 52007398  T
Q  102 actctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||   ||||| ||||||||||||    
T  52007399 actctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 40794273 - 40794213
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 113  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  40794273 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaata 40794213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 14571107 - 14571048
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  14571107 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 14571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 35509320 - 35509201
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcctttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagac 103  Q
    ||||||||||||||||||||||||||| ||        |||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||||     
T  35509320 cacgtttttcagtaatcgtgacacgatccc--------cttcttcagttttt-cttgttgcttaatcttgcttgtgaactcaaaaatatcatataaaga- 35509231  T
Q  104 tctaaaaataataaatgattgactgtcatca 134  Q
     ||||||||||  ||||| ||||||| ||||    
T  35509230 -ctaaaaataacgaatgactgactgttatca 35509201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 12782187 - 12782106
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||   ||||| ||||||||||||    
T  12782187 ttttcttgctgcttaagcttgcttgtaaactcaaaaatatcataaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 21419060 - 21419000
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 113  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  21419060 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaata 21419000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 29324048 - 29323978
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| |||||||||||||    
T  29324048 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcag 29323978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 44809835 - 44809904
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  44809835 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 27013311 - 27013229
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcata-aaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||| ||||| |||||| |||||||||||||| |||||||||||||||||   ||||| ||||||||||||    
T  27013311 ttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 34320775 - 34320839
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgt 129  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| |||||||    
T  34320775 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgt 34320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 5680550 - 5680491
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||| || |||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  5680550 ttttcttgttgtttaagcttgcttatgaactcaaaaatatcataaaaagactctaaaaat 5680491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 15431240 - 15431164
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  15431240 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 15437854 - 15437778
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  15437854 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 49269786 - 49269735
Alignment:
Q  83 tcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||||| |||||||||||   |||||| ||||||||||||    
T  49269786 tcaaaaatatcataaaaaaactctaaaaatgtaaaatgactgactgtcatca 49269735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 3798720 - 3798796
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| || |||||||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  3798720 ttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 3798796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 44164137 - 44164108
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgat 30  Q
    ||||||||||||||||||||||||||||||    
T  44164137 tgtcacgtttttcagtaatcgtgacacgat 44164108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 10880919 - 10880776
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagtttt---------ttcttgctgcttaatcttgcttgtgaattcaaaaat 90  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||||  |||         ||||||||||||||||||||||||||| ||||||||    
T  10880919 tgtcacgtttttcataaatcgtgacacgatgccttttttcagcttcttcaactttatcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaat 10880820  T
Q  91 atcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||||||||||  |||| | ||||||||||||    
T  10880819 atcataaaaagactctaaaaatagcaaataactgactgtcatca 10880776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 53815112 - 53814971
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagttttttcttg---------ctgcttaatcttgcttgtgaattcaaaaatat 92  Q
    |||||||||||||||| |||||||||||||||  |||||| |||||||| |||||||||         |||||||| |||||||||||| ||||||||||    
T  53815112 cacgtttttcagtaattgtgacacgatgccttcttttcagtttcttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatat 53815013  T
Q  93 cataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  53815012 cataaaaagactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 29344629 - 29344774
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaat 90  Q
    |||||||||||||| ||||||||||||||| ||  |||||||| ||||||| |||||        |||||||||||||||||||||||||| ||||||||    
T  29344629 tgtcacgtttttcaataatcgtgacacgatccccttttttcagtttcttcaatttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaat 29344728  T
Q  91 atcataa-aaagactctaaaaataataaatgattgactgtcatcag 135  Q
    ||||||| |||||||||||||||| | ||||| |||||||||||||    
T  29344729 atcataagaaagactctaaaaatagtgaatgactgactgtcatcag 29344774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 34984677 - 34984758
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  34984677 ttttcttgttgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 41976461 - 41976321
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatc 93  Q
    ||||||||||||||||||||||||||| ||  |||||||| |||||||||||||        |||||||| ||||||||||||||||| ||||||||||     
T  41976461 cacgtttttcagtaatcgtgacacgatccccttttttcagtttcttcagtttttgttgcttttcttgctgtttaatcttgcttgtgaactcaaaaatatt 41976362  T
Q  94 ataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||| ||||||||||||   ||||| ||||||||||||    
T  41976361 ataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 16243247 - 16243164
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcagg 136  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||| ||| ||||||||||    
T  16243247 ttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgattgtcatcagg 16243164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 43809003 - 43808898
Alignment:
Q  17 aatcgtgacacgatgcctttttc-agcttcttcagtttttt-------cttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaa 108  Q
    ||||||||||||||||||||||  |||||||||| ||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43809003 aatcgtgacacgatgcctttttttagcttcttcattttttttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaa 43808904  T
Q  109 aaataa 114  Q
    ||||||    
T  43808903 aaataa 43808898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 54460448 - 54460360
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcaggaaaca 141  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  54460448 ttttcttgttgcttaagattgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcagtaaaca 54460360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 20729345 - 20729477
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgc-cttt-ttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaa 100  Q
    ||||||||||||| ||||||||| ||| | |||| ||||| |||||| | ||||||||||||||||| |||||||||||| | ||||||||||| |||||    
T  20729345 cacgtttttcagttatcgtgacatgattcactttcttcagtttcttc-gatttttcttgctgcttaagcttgcttgtgaactaaaaaatatcataaaaaa 20729443  T
Q  101 gactctaaaaataataaatgattgactgtcatca 134  Q
     ||||||||||||   ||||| ||||||||||||    
T  20729444 aactctaaaaatagcgaatgactgactgtcatca 20729477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 54736769 - 54736842
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgac 126  Q
    |||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||    
T  54736769 ttttcttgttgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaatagtgaatgattgac 54736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 9380092 - 9380012
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatc 133  Q
    |||||||  ||||||| |||||||||||| |||||||||||||||||||||||||||||||   ||||| |||||||||||    
T  9380092 ttttcttattgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 16185575 - 16185634
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  16185575 ttttcttgctgcttaagcttgtttgtgaactcaaaaatatcataaaaagactctaaaaat 16185634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 35411758 - 35411699
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  35411758 ttttcttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 35411699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 3839874 - 3839790
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat---aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||| |||||||||||| |||||||||||||   ||||| |||||||||||| | ||||| ||||||||||||    
T  3839874 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcattaaaaaaaaactctaaaaatagtgaatgactgactgtcatca 3839790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 19305470 - 19305547
Alignment:
Q  57 cttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||  ||||||| || ||||||||    
T  19305470 cttgctgtttaagcttgcttgtgaactcaaaaatattataaaaagactctaaaaatatgaaatgatggattgtcatca 19305547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 31548632 - 31548573
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    ||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  31548632 ttttcttactgcttaagcttggttgtgaactcaaaaatatcataaaaagactctaaaaat 31548573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 19302295 - 19302364
Alignment:
Q  65 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||  ||||||  |||| ||||||    
T  19302295 ttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatgaaatgacggactatcatca 19302364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34984607 - 34984653
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttct 46  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  34984607 tgtcacgtttttcagtaatcgtgacacgatgccttttttcagcttct 34984653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 6445521 - 6445577
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttct 58  Q
    ||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  6445521 cacgtttttcagtaatcgtgacacgatgccctcttttcagtttcttcagttttttct 6445577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 10884094 - 10884018
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  10884094 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 23299477 - 23299553
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  23299477 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 23299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 538091 - 538015
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||| ||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  538091 ttgctgtttaaacttgtttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 538015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 6921966 - 6921890
Alignment:
Q  58 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||| ||||||||||| | ||||| ||||||||||||    
T  6921966 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatca 6921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 54460517 - 54460460
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttctt 59  Q
    |||| |||| ||||||||||||||||||||   ||||||| |||||||||||||||||    
T  54460517 cacgctttttagtaatcgtgacacgatgcccacttttcagtttcttcagttttttctt 54460460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 49743785 - 49743825
Alignment:
Q  94 ataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  49743785 ataaaaagactctaaaaataactaatgactgactgtcatca 49743825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 4728 - 4880
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagttttttcttgc------------------tgcttaatcttgcttgtgaa 81  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||                  |||||||||||| |||||||    
T  4728 tgtcacgtttttcagtaatcgtgacacgatgccttttttcagcttcttcagttttttcttgcttttctttctttttttgctgcttaatcttgtttgtgaa 4827  T
Q  82 ttcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
     ||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  4828 ctcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 28666086 - 28666177
Alignment:
Q  43 ttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  28666086 ttcttcagtttt-tcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatcag 28666177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10289329 - 10289184
Alignment:
Q  1 tgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaat 90  Q
    |||||||||||||||||||| ||||||||| ||  |||||||| |||||| ||||||        ||||| |||||||||||||||||||| ||||||||    
T  10289329 tgtcacgtttttcagtaatcttgacacgatccccttttttcagtttcttcggtttttcttgcttttcttgttgcttaatcttgcttgtgaactcaaaaat 10289230  T
Q  91 atcataaaaagactctaaaaataataaatgattgactgtcatcagg 136  Q
    |||||||||||||||||||||||   ||||| | ||||||||||||    
T  10289229 atcataaaaagactctaaaaatagcgaatgacttactgtcatcagg 10289184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 9953117 - 9953035
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||   ||||||  ||||||||||||    
T  9953117 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatcag 9953035  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 13004481 - 13004434
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaa 100  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13004481 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaa 13004434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 20181343 - 20181294
Alignment:
Q  64 cttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 113  Q
    ||||| |||||||||||| |||||||||||| |||| |||||||||||||    
T  20181343 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaata 20181294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 22154648 - 22154697
Alignment:
Q  64 cttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 113  Q
    ||||| |||||||||||| |||||||||||| |||| |||||||||||||    
T  22154648 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaata 22154697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 12987037 - 12987075
Alignment:
Q  97 aaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  12987037 aaaagaccctaaaaataatgaatgattgactgtcatcag 12987075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 4700 - 4563
Alignment:
Q  8 tttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttg---------ctgcttaatcttgcttgtgaattcaaaaatatcata 96  Q
    ||||||| ||||||||||||||||||  ||||| || ||||||||||||||||||         |||||||| |||||||||||| ||||||||||||||    
T  4700 tttttcaataatcgtgacacgatgcccttttttaagtttcttcagttttttcttgattttcttgctgcttaagcttgcttgtgaactcaaaaatatcata 4601  T
Q  97 aaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||| | ||||| ||||||||||||    
T  4600 aaaagactctaaaaatagtgaatgactgactgtcatca 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 12582358 - 12582218
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatc 93  Q
    ||||||||||| ||||||||||||||| ||  |||||||| |||||||||||||        |||| ||||||||||||||||||||| |||||||||||    
T  12582358 cacgtttttcaataatcgtgacacgatccccttttttcagtttcttcagtttttcttgcttttctttctgcttaatcttgcttgtgaactcaaaaatatc 12582259  T
Q  94 ataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||||||   ||||||||| | ||||||    
T  12582258 ataaaaagactctaaaaatagcgaatgattgattttcatca 12582218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 5981083 - 5981220
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt-----tcttgctgcttaatcttgcttgtgaattcaaaaatatcata 96  Q
    |||||||||||||||| |||||||||| ||  ||||| || |||||||||||||     | || || ||||| |||||||||||| ||||||||||||||    
T  5981083 cacgtttttcagtaattgtgacacgattccctttttttagtttcttcagtttttcttgcttttcctacttaaacttgcttgtgaactcaaaaatatcata 5981182  T
Q  97 aaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||||   ||||||  |||||||||||    
T  5981183 aaaagactctaaaaatgtgaaatgacggactgtcatca 5981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 45156837 - 45156919
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  45156837 ttttcttgctgctaaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatagaatgataaactgtcatcag 45156919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 5540917 - 5540973
Alignment:
Q  56 tcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  5540917 tcttgctgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 5540973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 14420945 - 14420886
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  14420945 ttttcttgttgcttaagcttgcttgtgaactaaaaaatatcataaaaagactctaaaaat 14420886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 18826771 - 18826834
Alignment:
Q  71 ttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  18826771 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 18826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 30640587 - 30640505
Alignment:
Q  54 tttcttgctgcttaatcttgcttgtgaattcaaaaatatcata--aaaagactctaaaaataataaatgattgactgtcatca 134  Q
    ||||||||||||||| |||||||||||| |||||| |||||||  |||||| ||| |||||| | ||||||||||||||||||    
T  30640587 tttcttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaaaagattcttaaaatagtgaatgattgactgtcatca 30640505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 17895377 - 17895433
Alignment:
Q  4 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttct 58  Q
    ||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  17895377 cacgtttttcagtaatcgtgacacgatgccctcttttcagtttcttcagttttttct 17895433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 19793009 - 19792925
Alignment:
Q  53 ttttcttgctgcttaatctt-gcttgtgaattcaaaaatatcata-aaaagactctaaaaataataaatgattgactgtcatcag 135  Q
    |||||||| || |||||||| ||||||||| |||||||||||||| ||||||||||||||||| | ||||   ||||||||||||    
T  19793009 ttttcttgttgtttaatctttgcttgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatcag 19792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 25228096 - 25228039
Alignment:
Q  52 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 110  Q
    ||||||||||| ||| | |||||||||||| ||||||||||||| ||||||||||||||    
T  25228096 tttttcttgcttcttgagcttgcttgtgaactcaaaaatatcat-aaaagactctaaaa 25228039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 10663075 - 10663011
Alignment:
Q  70 cttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||||||| |||| | |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  10663075 cttgcttgtgaactcaaca-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 923 - 1060
Alignment:
Q  8 tttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagtttttt---------cttgctgcttaatcttgcttgtgaattcaaaaatatcata 96  Q
    |||||||||||||||||||||||||| |  |||||| ||||||||||||||         |||||||||||| |||||||||||| ||||||||||||||    
T  923 tttttcagtaatcgtgacacgatgccctcttttcagtttcttcagttttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcata 1022  T
Q  97 aaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||| ||||||||| ||   ||||| ||||||||||||    
T  1023 aaaatactctaaaagtagcgaatgactgactgtcatca 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 4339 - 4396
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 110  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4339 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 4396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 11469 - 11526
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 110  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  11469 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 11526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 246269 - 246328
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  246269 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 246328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 197323 - 197264
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 112  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  197323 ttttcttgctgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 197264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 6472 - 6554
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||   ||||| ||||||||||||    
T  6472 ttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 1126 - 1045
Alignment:
Q  53 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 134  Q
    |||||||| ||||||| ||| ||| |||| || |||||||||||||||||||||||||||   |||||| ||||||||||||    
T  1126 ttttcttggtgcttaagcttccttatgaactccaaaatatcataaaaagactctaaaaatgtgaaatgactgactgtcatca 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 26336 - 26277
Alignment:
Q  52 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaa 111  Q
    |||||| |||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  26336 tttttcatgctgcttatgtttgcttgtgaactcaaaaatatcataaaaagactctaaaaa 26277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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