View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_high_15 (Length: 267)
Name: NF14907_high_15
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_high_15 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 95 - 267
Target Start/End: Complemental strand, 40510709 - 40510541
Alignment:
| Q |
95 |
tcaatacatagtattcactcctcacaatgttaattaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaa |
194 |
Q |
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| T |
40510709 |
tcaatacatagtattcactcctcacaatgttaatg----tgttaaattacataaaagtgtgaatgtgacgtaccaaaattgtcgatgagaccatgggaaa |
40510614 |
T |
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| Q |
195 |
taattgtcacattaaattgttgatgtgaccatcgggtagataagtgtattggatattggatgtcatgtcaaat |
267 |
Q |
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| T |
40510613 |
taattgtcacattaaattgttgatgtgaccatcgggtagataagtgtattggatattggatgtcatgtcaaat |
40510541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 40510933 - 40510855
Alignment:
| Q |
16 |
atgatgaaattatacaatgagtcatgctgctcaatttgcttacaggtgagaaaacaaaagagattagagtcatatgaaa |
94 |
Q |
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| T |
40510933 |
atgatgaaattatacaatgagtcatgctgctcaatttgcttacaggtcagaaaacaaaagagattagagtcatatgaaa |
40510855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 40519662 - 40519536
Alignment:
| Q |
116 |
tcacaatgttaattaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgtt |
215 |
Q |
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| T |
40519662 |
tcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgtt |
40519563 |
T |
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| Q |
216 |
gatgtgaccatcgggtagataagtgta |
242 |
Q |
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| T |
40519562 |
gatgtgaccatctggtatataaatgta |
40519536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 41781994 - 41782110
Alignment:
| Q |
128 |
ttaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatc |
227 |
Q |
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| T |
41781994 |
ttaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatt |
41782093 |
T |
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| Q |
228 |
gggtagataagtgtatt |
244 |
Q |
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| T |
41782094 |
tggtatataaatgtatt |
41782110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 40519927 - 40519875
Alignment:
| Q |
16 |
atgatgaaattatacaatgagtcatgctgctcaatttgcttacaggtgagaaa |
68 |
Q |
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| T |
40519927 |
atgatgaaattatacaatgaatcatgttgctcaatttgcatccaggtgagaaa |
40519875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 18163686 - 18163577
Alignment:
| Q |
128 |
ttaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatc |
227 |
Q |
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| T |
18163686 |
ttaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatc |
18163587 |
T |
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| Q |
228 |
gggtagataa |
237 |
Q |
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| T |
18163586 |
tggtatataa |
18163577 |
T |
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