View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14907_high_16 (Length: 265)
Name: NF14907_high_16
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_high_16 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 1354963 - 1355192
Alignment:
| Q |
18 |
caaagggtggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1354963 |
caaagggtggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttat |
1355062 |
T |
|
| Q |
118 |
ggaattgagctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaac |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
1355063 |
ggaattgagctttctgggttgtctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggattcgaggaaaggacgaaagaac |
1355162 |
T |
|
| Q |
218 |
gcggaattgtttggaagacatgggcacctc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1355163 |
gcggaattgtttggaagacatgggcacctc |
1355192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 1361849 - 1362078
Alignment:
| Q |
18 |
caaagggtggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |
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| T |
1361849 |
caaagggtggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcat |
1361948 |
T |
|
| Q |
118 |
ggaattgagctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaac |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1361949 |
ggaattgagctttctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaac |
1362048 |
T |
|
| Q |
218 |
gcggaattgtttggaagacatgggcacctc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
1362049 |
gcggaattgtttggaagacatgggcacctc |
1362078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 20492641 - 20492861
Alignment:
| Q |
25 |
tggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattg |
124 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| ||||| | ||| ||||| |||||||||| ||| ||||||||| |
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|
| T |
20492641 |
tggttggattcaaaagaatcatcttcggttgtttacattggattcgggagcgagttaaagttaaatcaacaagatctaactgagttagctcatggaattg |
20492740 |
T |
|
| Q |
125 |
agctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaat |
224 |
Q |
| |
|
||| ||| |||| |||||||||||| ||||||| || || ||||| ||||||||||||||||| ||||||||||| |||||||| |||||| ||||| |
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|
| T |
20492741 |
agcaatctaggttacctttcttttgggctttgaaaaaccttaaagaaggtacacttgaattacccgaaggatttgaagaaagaacaaaagaatatggaat |
20492840 |
T |
|
| Q |
225 |
tgtttggaagacatgggcacc |
245 |
Q |
| |
|
|||||||| ||||||||||| |
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|
| T |
20492841 |
cgtttggaaaacatgggcacc |
20492861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 247
Target Start/End: Original strand, 29954506 - 29954728
Alignment:
| Q |
25 |
tggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| |||||||||| || ||||||||| |
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|
| T |
29954506 |
tggttggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaactgagttagcgcatggaattg |
29954605 |
T |
|
| Q |
125 |
agctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaat |
224 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||| |
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|
| T |
29954606 |
agctttctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaat |
29954705 |
T |
|
| Q |
225 |
tgtttggaagacatgggcacctc |
247 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
29954706 |
cgtttggaaaacatgggcacctc |
29954728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 51369947 - 51369739
Alignment:
| Q |
25 |
tggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattg |
124 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
51369947 |
tggttggactcaaaagaatcatcttctgttgtttacattggatttggaagcgagtcaaagttagatcaacaagatttaactgagttagctcatggaattg |
51369848 |
T |
|
| Q |
125 |
agctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaat |
224 |
Q |
| |
|
| ||||||||||| |||||||||||| ||||||| ||| ||||| ||| | |||||||||| ||||||| ||||||||||| |||||||| ||||| |
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|
| T |
51369847 |
aactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaaagaacaaaagaacgtggaat |
51369748 |
T |
|
| Q |
225 |
tgtttggaa |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
51369747 |
tgtttggaa |
51369739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 11531819 - 11532039
Alignment:
| Q |
25 |
tggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattg |
124 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||| | ||||| ||||| ||| |||||| ||| ||||||||| |
|
|
| T |
11531819 |
tggttggattcaaaagaatcgtcttctgttgtttacattggatttgggagcgagacgaaaataagtcaacaagatctaattgagttagctcatggaattg |
11531918 |
T |
|
| Q |
125 |
agctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaat |
224 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
11531919 |
agctttctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaagaatttgaggaaagaacaaaagaacgtggaat |
11532018 |
T |
|
| Q |
225 |
tgtttggaagacatgggcacc |
245 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
11532019 |
tgtttggaaaacatgggcacc |
11532039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 14622587 - 14622807
Alignment:
| Q |
25 |
tggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattg |
124 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
14622587 |
tggttggattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattg |
14622686 |
T |
|
| Q |
125 |
agctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaat |
224 |
Q |
| |
|
|||||||| |||| || ||||||||| |||| || |||| ||||||||| ||||||||| ||| |||| || ||||||||||| |||||||||||||| |
|
|
| T |
14622687 |
agctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaat |
14622786 |
T |
|
| Q |
225 |
tgtttggaagacatgggcacc |
245 |
Q |
| |
|
||||||||| || |||||||| |
|
|
| T |
14622787 |
tgtttggaaaacttgggcacc |
14622807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 14588929 - 14589137
Alignment:
| Q |
25 |
tggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattg |
124 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
14588929 |
tggttggattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattg |
14589028 |
T |
|
| Q |
125 |
agctttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaat |
224 |
Q |
| |
|
|||||||| |||| || ||||||||| |||| || |||| ||||||||| ||||||||| ||| |||| || ||||||||||| |||||||||||||| |
|
|
| T |
14589029 |
agctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaat |
14589128 |
T |
|
| Q |
225 |
tgtttggaa |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
14589129 |
tgtttggaa |
14589137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 12846488 - 12846704
Alignment:
| Q |
29 |
tggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagct |
128 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| | || ||||| |||| || || ||| ||||||||||||| |
|
|
| T |
12846488 |
tggattcaagagaatcatcttccgttgtttacattggatttgggagcgagttgaggttaacgcaaaaagatctaaccgaattagctcatggaattgagct |
12846587 |
T |
|
| Q |
129 |
ttctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtt |
228 |
Q |
| |
|
|||| |||| |||||||||||| ||||||| || || ||| ||||||||||||| |||||| ||||||| || || |||| |||||||| ||||||||| |
|
|
| T |
12846588 |
ttctaggttacctttcttttgggctttgaaaaacctaaaaaagggtacacttgagttacctaaaggattcgaagatcgaaccaaagaacgtggaattgtt |
12846687 |
T |
|
| Q |
229 |
tggaagacatgggcacc |
245 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
12846688 |
tggaaaacatgggcacc |
12846704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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