View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_high_19 (Length: 240)
Name: NF14907_high_19
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 51035602 - 51035407
Alignment:
| Q |
17 |
acaaccatcaaaactaaggtaattaaacaacaaaatatgtaagacattatatatgaagagaaaaacttccattgagagttcaagttgttggtctaattaa |
116 |
Q |
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| T |
51035602 |
acaaccatcaaaactaaggtaattaaacaacaaaatatgtaagacatta---------------acttccattgagagttcaagttgttggtctaattaa |
51035518 |
T |
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| Q |
117 |
aataattattgtttgcaatttgtggaaaaggtattgattgggtgtgatggagtaaactctgtggtagcaaaatggttaggcttcaaggaggcctcttacg |
216 |
Q |
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| T |
51035517 |
aataattattgtttgcaatttgtggaaaaggtattgattgggtgtgatggagtaaactctgtggtagcaaaatggttaggcttcaaggaggcctcttacg |
51035418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 51031330 - 51031182
Alignment:
| Q |
63 |
ttatatatgaagagaaaaacttccattgagagttcaagttgttggtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
162 |
Q |
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| T |
51031330 |
ttatatatgaagataaaaacttcctttgagagttcaagttgttagtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
51031231 |
T |
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| Q |
163 |
atggagtaaactctgtggtagcaaaatggttaggcttcaaggaggcctc |
211 |
Q |
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| T |
51031230 |
atggagtaaactctgtggtggcaaaatggttagggttcaaggaagcctc |
51031182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 51064082 - 51063934
Alignment:
| Q |
63 |
ttatatatgaagagaaaaacttccattgagagttcaagttgttggtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
162 |
Q |
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| T |
51064082 |
ttatatatgaagataaaaacttcctttgagagttcaagttgttagtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
51063983 |
T |
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| Q |
163 |
atggagtaaactctgtggtagcaaaatggttaggcttcaaggaggcctc |
211 |
Q |
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| T |
51063982 |
atggagtaaactctgtggtggcaaaatggttagggttcaaggaagcctc |
51063934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 40616751 - 40616824
Alignment:
| Q |
142 |
aaaaggtattgattgggtgtgatggagtaaactctgtggtagcaaaatggttaggcttcaaggaggcctcttac |
215 |
Q |
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| T |
40616751 |
aaaaggtattgatcgggtgtgatggagttaactctttggtagcaaagtggctaggcttcaaggaggcctcttac |
40616824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 51069463 - 51069396
Alignment:
| Q |
142 |
aaaaggtattgattgggtgtgatggagtaaactctgtggtagcaaaatggttaggcttcaaggaggcc |
209 |
Q |
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| T |
51069463 |
aaaaggtattgataggatgtgatggaatcaactctgtggttgcaaagtggttaggcttcaaggaggcc |
51069396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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