View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_high_21 (Length: 207)
Name: NF14907_high_21
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 28947096 - 28946937
Alignment:
| Q |
32 |
ctcaatcctccccttccaaactcactctctcactaaaatggaagaacaacaagacccacccactctcacactccaaatcctcgccggtccacgcaacgga |
131 |
Q |
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| T |
28947096 |
ctcaatcctccccttccaaactcactctctcactaaaatggaagaacaacaagacccacccactctcacactccaaatcctcgccggtccacgcaacgga |
28946997 |
T |
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| Q |
132 |
gaaacccaccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaac |
191 |
Q |
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| T |
28946996 |
gaaacccaccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaac |
28946937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28947155 - 28947101
Alignment:
| Q |
1 |
attgaataactcttttgtaaaatgacaatagctcaatcctccccttccaaactca |
55 |
Q |
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| T |
28947155 |
attgaataactcttttgtaaaatgacaatagctcaatcctccccttccaaactca |
28947101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 34824463 - 34824300
Alignment:
| Q |
32 |
ctcaatcctccccttccaaactcactc----tctcactaaaatggaagaacaacaagacccacccactctcacactccaaatcctcgccggtccacgcaa |
127 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
34824463 |
ctcaatcctccccttccaaactcactcactctctcactaaaatggaagaacaacaagactcacccactcttacactccaaatcctcgccggtccacgcaa |
34824364 |
T |
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| Q |
128 |
cggagaaacccaccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaac |
191 |
Q |
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| T |
34824363 |
cggagaaacccaccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaac |
34824300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 42231756 - 42231824
Alignment:
| Q |
123 |
cgcaacggagaaacccaccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaac |
191 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |
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| T |
42231756 |
cgcaacggcgaaacccaccaattcgaacctggatccaccatcaaaatcggtcgggtcatacgcggcaac |
42231824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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