View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_high_5 (Length: 444)
Name: NF14907_high_5
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 40384180 - 40383751
Alignment:
| Q |
1 |
ttttcagtttctaattattctattgttttgctaattcaacaattttatagtagcataaatatcccggaataaaataattgcttgtcatggataaattgga |
100 |
Q |
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| T |
40384180 |
ttttcagtttctaattattctattgttttgctaattcaacaattt-atagtagcataaatatcccggaataaaataattgcttgtcatggataaattgga |
40384082 |
T |
|
| Q |
101 |
gtacttaccgtaacaaatatatctttgaggagaataccatagcacagccatataattgcacttgttgtgaggaggagtgaaagagtgaaaggcataaact |
200 |
Q |
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| T |
40384081 |
gtacttaccgtaacaaatatatctttgaggagaataccatagcacagccatataattgcacttgttgtgaggaggagtgaaagagtgaaaggcataaact |
40383982 |
T |
|
| Q |
201 |
caacacttttggtgcgaataaccactctctgaaattgaacaaagattattcatgcataagcacatggtagttataaagaataaagaagaattaagcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383981 |
caacacttttggtgcgaataaccactctctgaaattgaacaaagattattcatgcataagcacatggtagttataaagaataaagaagaattaagcaaat |
40383882 |
T |
|
| Q |
301 |
tttgttatataatatgtaccataacgcttaaaggtgctgcaaaaacactagttgagaggacaacacaaatccatccaagaagttcgatacgttctgttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383881 |
tttgttatataatatgtaccataacgcttaaaggtgctgcaaaaacactagttgagaggacaacacaaatccatccaagaagttcgatacgttctgttcg |
40383782 |
T |
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| Q |
401 |
ttcttttgctagaacatgtgttagaataatc |
431 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40383781 |
ttcttttgctagaacatgtgttagaataatc |
40383751 |
T |
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