View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14907_high_6 (Length: 414)
Name: NF14907_high_6
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 3418260 - 3417867
Alignment:
| Q |
18 |
gttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3418260 |
gttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatc |
3418161 |
T |
|
| Q |
118 |
aatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatatttgtgactaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3418160 |
aatcaagatagggctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattcgtatcaacacatatatatttgtgactaaa |
3418061 |
T |
|
| Q |
218 |
attccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatcaatcaatgtat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3418060 |
attccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatcaatcaatgtat |
3417961 |
T |
|
| Q |
318 |
atatataaagtttgaaag-nnnnnnnnnnacatcaattttggattacggattcacatcaattctggatttgttgttcacatagaataatctacc |
410 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3417960 |
atatataaagtttaaaagtttttttttttacatcaattttggattacggattcacatctattctggatttgttgttcacatagaataaactacc |
3417867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 19067846 - 19068163
Alignment:
| Q |
18 |
gttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19067846 |
gttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatc |
19067945 |
T |
|
| Q |
118 |
aatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatatttgtgactaaa |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19067946 |
aatcaagatagagctgattttgcttttctaaatacatgtgtctacctccgtttcatcttaataatccattggtatcaacacatatatatttgtgactaaa |
19068045 |
T |
|
| Q |
218 |
attccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatcaatcaatgtat |
317 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19068046 |
attccccaacgtgtattcaaccattgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatcaatcaatgtat |
19068145 |
T |
|
| Q |
318 |
atatataaagtttgaaag |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19068146 |
atatataaagtttgaaag |
19068163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 34309073 - 34308758
Alignment:
| Q |
18 |
gttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatc |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34309073 |
gttacagggttcaattttattaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatc |
34308974 |
T |
|
| Q |
118 |
aatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatatttgtgactaaa |
217 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
34308973 |
aattaagatagagctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattggtatcaacgc--atatatttgtgactaaa |
34308876 |
T |
|
| Q |
218 |
attccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatcaatcaatgtat |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34308875 |
attccccaacgtgtattcaaccactgagataattactccattaaaattcaatatttgagagcttttcttgtaagatctattgaccaatcaatcaatgtat |
34308776 |
T |
|
| Q |
318 |
atatataaagtttgaaag |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34308775 |
atatataaagtttgaaag |
34308758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 49090449 - 49090134
Alignment:
| Q |
18 |
gttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatc |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49090449 |
gttacaaggttcaattttatcaaaactcataaatttgatacgaacatgtttccaattttctagaaatcatgatgccgctgaaagaataaattcataaatc |
49090350 |
T |
|
| Q |
118 |
aatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatatttgtgactaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49090349 |
aatcaagatagggctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattgatatcaacacatatatatttgtgactaaa |
49090250 |
T |
|
| Q |
218 |
attccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatcaatcaatgtat |
317 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
49090249 |
attccccaacgtgtattcaaccactgggacaattactccattaaaattcaatatttgggagcttttcttgtaagatctatggaccaatcaatcaa--tat |
49090152 |
T |
|
| Q |
318 |
atatataaagtttgaaag |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
49090151 |
atatataaagtttgaaag |
49090134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 46917599 - 46917486
Alignment:
| Q |
153 |
atgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataatta |
252 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||| |||||| || ||||||||||||| |||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
46917599 |
atgtgcctgcctctgtttcatctttataatccatttgtatcatca--tatatatttgtgattaaaattccccaacatgtattcaaccactgagacaattg |
46917502 |
T |
|
| Q |
253 |
ctccattaaaattcaa |
268 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
46917501 |
ttccattgaaattcaa |
46917486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 46917727 - 46917643
Alignment:
| Q |
65 |
gtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatcaatc-aagatagggctgattttgcttttctaaat |
150 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
46917727 |
gtttccaattttctagaaatcatgatgctg-tgaaaacataaattcataaatcaatcaaagata-tgccgattttgcttttctaaat |
46917643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 107 - 335
Target Start/End: Complemental strand, 4085669 - 4085441
Alignment:
| Q |
107 |
attcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4085669 |
attcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattggtatcaacacatatatat |
4085570 |
T |
|
| Q |
207 |
ttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4085569 |
ttgtgactaaaattccccaacgtgtattcaaccactaagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatc |
4085470 |
T |
|
| Q |
307 |
aatcaatgtatatatataaagtttgaaag |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4085469 |
aatcaatgtatatatataaagtttgaaag |
4085441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 4085429 - 4085389
Alignment:
| Q |
370 |
acatcaattctggatttgttgttcacatagaataatctacc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4085429 |
acatcaattctggatttgttgttcacatagaataaactacc |
4085389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 41787203 - 41787278
Alignment:
| Q |
202 |
tatatttgt-gactaaaattccccaacgtgtatt---caactactgagataattactccattaaaattcaatattt |
273 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||| |||| |
|
|
| T |
41787203 |
tatatttgttgactaaaattccccaaagtgtattcaacaaccactgagataattattccattgaaattcaaaattt |
41787278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 19654394 - 19654494
Alignment:
| Q |
168 |
tttcatcttaataatccattggtatcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattca |
267 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||| |||||| ||||||| |
|
|
| T |
19654394 |
tttcatctttataatccatttgtatgaacacatatatatttgtgattaaaattccccaacgtgtattcaaccaccgagacaattattccattgaaattca |
19654493 |
T |
|
| Q |
268 |
a |
268 |
Q |
| |
|
| |
|
|
| T |
19654494 |
a |
19654494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 12345635 - 12345671
Alignment:
| Q |
368 |
tcacatcaattctggatttgttgttcacatagaataa |
404 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12345635 |
tcacaacaattctggatttgttgttcacatagaataa |
12345671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University