View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_high_8 (Length: 374)
Name: NF14907_high_8
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_high_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 45383354 - 45382999
Alignment:
| Q |
19 |
tagtgtttgcatatacaacacccctgccaaagagctcagccatcgtcctcagttgcgtttcatcaaccgaccatccatctcagtccacctcaaatcagtt |
118 |
Q |
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| T |
45383354 |
tagtgtttgcatatacaacacccctgccaaagagctcagccatcgtcctcagttgcgtttcatcaaccgaccatcgatctcagtccacctcaaatcagtt |
45383255 |
T |
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| Q |
119 |
ttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaagggtctatttacttcgtaaacacat |
218 |
Q |
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| T |
45383254 |
ttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaagggtctatttacttcgtaaacacgt |
45383155 |
T |
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| Q |
219 |
tttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaagaaatgacaaaaaatagctcattt |
318 |
Q |
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| T |
45383154 |
tttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaagaaataacaaaaaatagctcattt |
45383055 |
T |
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| Q |
319 |
aacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttc |
374 |
Q |
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| T |
45383054 |
aacattttcattgtttccgaaagtacaacacaattattcacttcaagagtcttttc |
45382999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 16265448 - 16265516
Alignment:
| Q |
305 |
aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtctttt |
373 |
Q |
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| T |
16265448 |
aaaatagctattttgacattttcattgtttctggaaatgcaagacaaatgttcacttcaagagtctttt |
16265516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 41978263 - 41978325
Alignment:
| Q |
305 |
aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagag |
367 |
Q |
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| T |
41978263 |
aaaatagttcttttgacattttcattgtttccggaaatgcaaaacaattcttcacttcaagag |
41978325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 9151330 - 9151382
Alignment:
| Q |
322 |
attttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttc |
374 |
Q |
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| T |
9151330 |
attttcatcgtttccagaaatgcaagacaattgttcacttcaagagtcttttc |
9151382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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