View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_11 (Length: 373)
Name: NF14907_low_11
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 38 - 316
Target Start/End: Complemental strand, 40508533 - 40508257
Alignment:
| Q |
38 |
taaattttcttttataggaacataaatttatcttatatacaattaaattaactctattatctttacattttgatttgcaggattttgagaatgaagaatt |
137 |
Q |
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| T |
40508533 |
taaattttcttttataggaacataaatttatcttata--caattaaattaactctattatctttacattataatttgcaggattttgagaatgaagaatt |
40508436 |
T |
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| Q |
138 |
ggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatccaacaagaatcatgtcctatttgtagaacttatgtt |
237 |
Q |
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| T |
40508435 |
ggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatccaacaaggatcatgtcccatttgtagaacttatgtt |
40508336 |
T |
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| Q |
238 |
gttgatcacattaattcgtgatagtttggnnnnnnngttgatgtataatagttttgttttgagcttcgtccctctttgt |
316 |
Q |
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| T |
40508335 |
gttgatcacattaattcgtgatagtttggtttttttgttgatgtataatagttttgttttgagcttcgtccctctttgt |
40508257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 40519526 - 40519371
Alignment:
| Q |
103 |
cattttgatttgcaggattttgagaatgaagaattggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatcc |
202 |
Q |
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| T |
40519526 |
cattttgatttgcaggattttgagaatgaagaattggtgagattacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagtac |
40519427 |
T |
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| Q |
203 |
aacaagaatcatgtcctatttgtagaacttatgttgttgatcacattaattcgtga |
258 |
Q |
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| T |
40519426 |
aacaaggatcatgtcctatttgtagaacttacgttcctgaccatattaattcgtga |
40519371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40510568 - 40510529
Alignment:
| Q |
1 |
gtattggatattggatgtcatgtcgaataggcaaaactaa |
40 |
Q |
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| T |
40510568 |
gtattggatattggatgtcatgtcaaataggcaaaactaa |
40510529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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