View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_13 (Length: 351)
Name: NF14907_low_13
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 83 - 274
Target Start/End: Complemental strand, 33319007 - 33318821
Alignment:
| Q |
83 |
cctaatggaataaaactaaggtgaagaaaaaatagtatgtttccaacaaccaaatagatgtccatcctcttttaaaagccatctcaatagctaatatatc |
182 |
Q |
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| T |
33319007 |
cctaatggaataaaattaaggtgaagaaaaaatagtatgtttccaac---caaatagatgtccatcctcttttaaaagccatctcaatagctaatatatc |
33318911 |
T |
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| Q |
183 |
actatgatgttcaacattaaaggaggaagatataattaaattacaaatataacaaccaagatcaatagctttagtatctttaaaaataccac |
274 |
Q |
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| T |
33318910 |
actatgat--tcaacattaaaggaggaagatataattaaattacaaatataacaaccaagatcaatagctttagtatctttaaaaataccac |
33318821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 33318825 - 33318787
Alignment:
| Q |
294 |
accacttccatatgtattacatttaatccaagagatcac |
332 |
Q |
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| T |
33318825 |
accacttccatatgtattacatttaatccaagatatcac |
33318787 |
T |
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