View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14907_low_14 (Length: 328)
Name: NF14907_low_14
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 2589102 - 2588803
Alignment:
| Q |
13 |
aaaattacatttttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatgacaaatgtagatatagac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
2589102 |
aaaattacatttttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatggcaaatgtagatatggac |
2589003 |
T |
|
| Q |
113 |
taaagattcatattgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgattacctgcatgaatag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2589002 |
taaagattcatattgattgagtagttagttttgtatcaaatcaagatattattcacatgtatagtaagatactaataaccatgattacctgcatgaatag |
2588903 |
T |
|
| Q |
213 |
tgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgcaccatgttggaattggttgctgttgttgctacttcctcctatttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
2588902 |
tgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgcaccatgttggaattggttgctgtagttgctgcttcctcctatttg |
2588803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 36251274 - 36251229
Alignment:
| Q |
141 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatacta |
186 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
36251274 |
ttttatatcaattcaagatatgattcacatgtatagtaagatacta |
36251229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 20920891 - 20920806
Alignment:
| Q |
180 |
gatactaataaccatgattacctgcatgaatagtgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgca |
268 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | ||||||||||||||| ||||||| |||| |||| || ||||| ||||||||||| |
|
|
| T |
20920891 |
gataataataaccatgattacctgtatgatgaatgatctgatttgcaa---caggtaccgcaggttgcacacgttgggcaagaggtgca |
20920806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 14161110 - 14161058
Alignment:
| Q |
139 |
agttttgtatcaaatcaagatactattcacatgtatagtaagatactaataac |
191 |
Q |
| |
|
||||||||||| ||||||||||| | ||| || |||||||||||||| ||||| |
|
|
| T |
14161110 |
agttttgtatcgaatcaagatacgactcaaatctatagtaagatactgataac |
14161058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 27329256 - 27329329
Alignment:
| Q |
123 |
tattgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgatt |
198 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| | |||| ||| |||||||| |||||||| | |||||||||||| |
|
|
| T |
27329256 |
tattgattgagt--ttagttttgtatcgaatcgatatacaattaacatgtatcgtaagatattgataaccatgatt |
27329329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 41335496 - 41335424
Alignment:
| Q |
193 |
atgattacctgcatgaatagtgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgca |
268 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||| |||| ||||||||| || ||||| ||||||||||| |
|
|
| T |
41335496 |
atgattacctgtatgatgagtgatctgatctgcaacag---gtaccgcagcttgcgcacgttgggcaagaggtgca |
41335424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 41042642 - 41042586
Alignment:
| Q |
141 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgat |
197 |
Q |
| |
|
|||| |||| ||||||||||| | || ||||||| |||||||||| ||||||||||| |
|
|
| T |
41042642 |
ttttctatcgaatcaagatacgactcgcatgtatcgtaagatactgataaccatgat |
41042586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University