View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14907_low_15 (Length: 303)

Name: NF14907_low_15
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14907_low_15
NF14907_low_15
[»] chr3 (2 HSPs)
chr3 (24-263)||(45382702-45382950)
chr3 (61-107)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (32-112)||(27661703-27661783)
chr6 (75-112)||(26650237-26650274)
chr6 (75-112)||(26756205-26756242)
chr6 (76-116)||(12627824-12627864)
chr6 (72-112)||(29449688-29449728)
chr6 (137-187)||(8148268-8148318)
chr6 (131-184)||(20809178-20809231)
chr6 (83-112)||(28783014-28783043)
chr6 (73-130)||(34057962-34058019)
chr6 (150-186)||(29670971-29671007)
chr6 (73-109)||(30537508-30537544)
chr6 (136-184)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (72-112)||(43160491-43160531)
chr7 (74-121)||(10893872-10893919)
chr7 (70-112)||(650524-650566)
chr7 (76-112)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (73-112)||(28136673-28136712)
chr5 (75-112)||(645342-645379)
chr5 (76-121)||(11601688-11601733)
chr5 (136-184)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (137-179)||(14229600-14229642)
chr8 (72-112)||(32691750-32691790)
chr8 (73-121)||(41686804-41686852)
chr8 (73-121)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (70-166)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (62-112)||(10164460-10164510)
chr4 (74-112)||(28890768-28890806)
chr4 (80-116)||(29388374-29388410)
chr4 (72-112)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (76-121)||(264615-264660)
chr1 (132-172)||(27835482-27835522)
chr1 (76-112)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 45382702 - 45382950
Alignment:
Q  24 agagacatgaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgac 123  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45382702 agagacatgaacactggacttcacactgacattcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgac 45382801  T
Q  124 a-----------gacacagacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttcattatttaccaattagtcacttcct 212  Q
    |           ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||    
T  45382802 atgttggtgtcagacacagacaaatgtcggacaccggacatgccttcgatcagaagtat-tgtgctacaaagttcattatttaccaattagtcaattcct 45382900  T
Q  213 ttgctttctccacttctatgaaacttaattgtcatacagaattacggctta 263  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45382901 ttgctttctccacttctatgaaactt-attgtcatacagaattacggctta 45382950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 47362558 - 47362604
Alignment:
Q  61 cgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaat 107  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  47362558 cgtcaacatcagtaataatttaagaaaattacataattgaatgtaat 47362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 27661703 - 27661783
Alignment:
Q  32 gaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||| |||| ||||| ||||| ||||||||||||   ||||||||||||||||||| |||||| |||||||||||||    
T  27661703 gaacaccgaactcgacactaacactgattcgtcaacattgatagtaatttaagaaaataatatatttcaatgtaatcacat 27661783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 26650274 - 26650237
Alignment:
Q  75 gtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacat 26650237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 26756242 - 26756205
Alignment:
Q  75 gtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacat 26756205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 12627864 - 12627824
Alignment:
Q  76 taatttaagaaaataacatatttgaatgtaatcacatatgt 116  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 29449688 - 29449728
Alignment:
Q  72 gtagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  29449688 gtagtaatttcagaaaataacataattgaatgtaatcacat 29449728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 8148318 - 8148268
Alignment:
Q  137 tgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttc 187  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||| |||||    
T  8148318 tgtcggacaccagacatgccttccatcggaaatgtcggtgctacatagttc 8148268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 20809231 - 20809178
Alignment:
Q  131 gacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 184  Q
    |||| ||||||||||||||||||||||||||||  || ||||  ||||||||||    
T  20809231 gacacatgtcggacaccggacatgccttcgatccaaagtgtcgatgctacaaag 20809178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 28783043 - 28783014
Alignment:
Q  83 agaaaataacatatttgaatgtaatcacat 112  Q
    ||||||||||||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacat 28783014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 34057962 - 34058019
Alignment:
Q  73 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacaca 130  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||| ||||||||    
T  34057962 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 34058019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 29670971 - 29671007
Alignment:
Q  150 acatgccttcgatcagaaatgtctgtgctacaaagtt 186  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29670971 acatgccttcgatcagaaatgtcggtggtacaaagtt 29671007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 30537508 - 30537544
Alignment:
Q  73 tagtaatttaagaaaataacatatttgaatgtaatca 109  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatca 30537544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 31811989 - 31812037
Alignment:
Q  136 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 184  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||    
T  31811989 atgtcggacactggacatgcctttgatcagaggtgtcagtgctacaaag 31812037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 43160491 - 43160531
Alignment:
Q  72 gtagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacat 43160531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 10893919 - 10893872
Alignment:
Q  74 agtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 121  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtg 10893872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 650524 - 650566
Alignment:
Q  70 cagtagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  650524 cagtagtaatttaagaaaatgacataattgaatgcaatcacat 650566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 18750887 - 18750923
Alignment:
Q  76 taatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacat 18750923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 28136673 - 28136712
Alignment:
Q  73 tagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacat 28136712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 645342 - 645379
Alignment:
Q  75 gtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacat 645379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 11601688 - 11601733
Alignment:
Q  76 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 121  Q
    |||||||||||| |||  || |||||||||||||||||||||||||    
T  11601688 taatttaagaaactaaattaattgaatgtaatcacatatgttggtg 11601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 12478334 - 12478382
Alignment:
Q  136 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 184  Q
    ||||| |||||| |||| |||||| |||||||||||| |||||||||||    
T  12478334 atgtcagacaccagacacgccttccatcagaaatgtcggtgctacaaag 12478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 14229600 - 14229642
Alignment:
Q  137 tgtcggacaccggacatgccttcgatcagaaatgtctgtgcta 179  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  14229600 tgtcggacaccggacatgccttcgatcagaagtgtcagtgcta 14229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 32691750 - 32691790
Alignment:
Q  72 gtagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatcacat 32691790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 41686852 - 41686804
Alignment:
Q  73 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 121  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtg 41686804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 31681881 - 31681833
Alignment:
Q  73 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 121  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtg 31681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 9957045 - 9956949
Alignment:
Q  70 cagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcaga 166  Q
    ||||| |||||| | |||||||  |||||||| ||||| |||| |||  ||| | ||||| |||| ||||| ||||||||||||||||| |||||||    
T  9957045 cagtaataatttgacaaaataaattatttgaacgtaatgacatgtgtccgtgccggacaccgacacatgtcagacaccggacatgcctttgatcaga 9956949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 10164460 - 10164510
Alignment:
Q  62 gtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||||    
T  10164460 gtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 28890768 - 28890806
Alignment:
Q  74 agtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacat 28890806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 29388410 - 29388374
Alignment:
Q  80 ttaagaaaataacatatttgaatgtaatcacatatgt 116  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacatatgt 29388374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 45615467 - 45615427
Alignment:
Q  72 gtagtaatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  45615467 gtagtaatttaagaaaatgacataattgaacgtaatcacat 45615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 264615 - 264660
Alignment:
Q  76 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 121  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtg 264660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 27835482 - 27835522
Alignment:
Q  132 acaaatgtcggacaccggacatgccttcgatcagaaatgtc 172  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  27835482 acaaatgtcggacaccagacatgccttcaatcagaagtgtc 27835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 43609866 - 43609830
Alignment:
Q  76 taatttaagaaaataacatatttgaatgtaatcacat 112  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacat 43609830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University