View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_18 (Length: 271)
Name: NF14907_low_18
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 6498092 - 6498341
Alignment:
| Q |
9 |
acatcatcatattaaaaacgtggcactacaagtgtgaggcaattgtatttattctacccattccttttgttttgtactctgctgtgttgttttgcttatt |
108 |
Q |
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| T |
6498092 |
acatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactctgctgtgttgttttgcttatt |
6498191 |
T |
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| Q |
109 |
tggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaaattttcggggtgtgagttggag-nnnnnn |
207 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
6498192 |
tggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttttt |
6498291 |
T |
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| Q |
208 |
nnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttag |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6498292 |
tttactgaactatgctgtgaaattggtaggatcttatgctatgtgtttag |
6498341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 31733101 - 31733347
Alignment:
| Q |
9 |
acatcatcatattaaaaacgtggcactacaagtgtgaggcaattgtatttattctacccattccttttgttttgtactctgctgtgttgttttgcttatt |
108 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
31733101 |
acatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctgtgtggttttgcttatt |
31733200 |
T |
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| Q |
109 |
tggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaaattttcggggtgtgagttggag-nnnnnn |
207 |
Q |
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| T |
31733201 |
tggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttttt |
31733300 |
T |
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| Q |
208 |
nnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31733301 |
ttgactgaactatgctgtgaaattggtaggatcttatgctatgtgtt |
31733347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 31735815 - 31735946
Alignment:
| Q |
43 |
tgaggcaattgtatttattctacccattccttttgttttgtactctgctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtat |
142 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31735815 |
tgaggcaattgtttttattctactcattccttttgttttgtactc--ctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtat |
31735912 |
T |
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| Q |
143 |
gacgatatgttatgatcctgaataggagtttcat |
176 |
Q |
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||| ||||||| ||||||||||| |||||||||| |
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| T |
31735913 |
gactatatgttgtgatcctgaattggagtttcat |
31735946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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