View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_2 (Length: 765)
Name: NF14907_low_2
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 19 - 751
Target Start/End: Original strand, 25966938 - 25967677
Alignment:
| Q |
19 |
acaaggaagtgacacctatagcatcccttgcaacaatgaaactgttgtcacgagtatccaacagaacaaatgaaaagataccatccaacatgtccacaaa |
118 |
Q |
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| T |
25966938 |
acaaggaagtgacacctatagcatcccttgcaacaatgaaactgttgtcacgagtatccaacagaacaaaggaaaagataccatccaacatgtccacaaa |
25967037 |
T |
|
| Q |
119 |
attttctccatactcctcatactaacaacaaaaattaccaaaatcaataacattcttggtacaataattagcaatgttttaaataacggtccgcgaccgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
25967038 |
attttctccatactcctcatactaacaacaaaaattaccaaaatcaataacattaatggtacaataattagcaatgttttaaataaaggtccacgaccgc |
25967137 |
T |
|
| Q |
219 |
aacctagaccgcgacatactaaccaggtgtgcaataacatcacagtcacattgtgtacgaaatttgtgattaggcaattgtttcctgaggtcttcatgat |
318 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25967138 |
aacctagaccgtgacatactaaccaggtgtgcaataacatcacagtcacattgtgtacggaatttgtgattaggcaattgtttcctgaggtcttcatgat |
25967237 |
T |
|
| Q |
319 |
tgtagatctctccattcacctgaattttatgataaaatttatatgttactaccactttaaaaactatatagtataaaaaatgtaataaactatagaatat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25967238 |
tgtagatctctccattcacctgaattttatgataaaatttatatgttactaccactttaaaaactatatagtataaaaaatgtaataaactatagaatat |
25967337 |
T |
|
| Q |
419 |
tattaccgtgacaataattgatttatcttcattgaagagaggttgatcaccagaagcaggatcaacgatggctaacctttgatgagccaaatagttatca |
518 |
Q |
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| T |
25967338 |
tattaccgtgacaataattgatttatcttcattgaagagaggttgatcaccagaagcaggatcaacaatggctaacctttgatgagccaaatagttatca |
25967437 |
T |
|
| Q |
519 |
ccatgttggtggagcccactccagtctggaccacggtgcttcaatctgtgacatcatatgaaaaaatattaatatatgatcaatcaaattacttatcaaa |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25967438 |
ccatgttggtggagcccactccagtctggaccacggtgcttcaatctgtgacatcatatgaaaaaatattaatatatgatcaatcaaattacttatcaaa |
25967537 |
T |
|
| Q |
619 |
ctagc-------acttattaattattattctaattggactttatgtatatgaacgggtaattaaaaattcccacgtgatttattaaaataaaaattccac |
711 |
Q |
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| T |
25967538 |
ctagccgaagttacttattaattattattctaattggactttatgtatatgaacatgtaattaaaaattcccacgtgatttattaaaataaaaattccac |
25967637 |
T |
|
| Q |
712 |
atgcaagacaaattaatttcatctctttttcgttgatttt |
751 |
Q |
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| T |
25967638 |
atgcaagacaaattaattttatctctttttcgttgatttt |
25967677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 422 - 567
Target Start/End: Original strand, 30274688 - 30274833
Alignment:
| Q |
422 |
taccgtgacaataattgatttatcttcattgaagagaggttgatcaccagaagcaggatcaacgatggctaacctttgatgagccaaatagttatcacca |
521 |
Q |
| |
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|||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||| || |||||| |
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| T |
30274688 |
taccgtgacaatgacagatttgtcttcattaaagagaggttgatccccagaagcaggatcaactatggctaaccgttggtgtgccaaaaagcagtcacca |
30274787 |
T |
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| Q |
522 |
tgttggtggagcccactccagtctggaccacggtgcttcaatctgt |
567 |
Q |
| |
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|||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
30274788 |
tgttggtggagcccactccaatcagggccacggtgcttcaatctgt |
30274833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 30274108 - 30274228
Alignment:
| Q |
23 |
ggaagtgacacctatagcatcccttgcaacaatgaaactgttgtcacgagtatccaacagaacaaatgaaaagataccatccaacatgtccacaaaattt |
122 |
Q |
| |
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|||||| || ||||||||||| || || || ||| ||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||| | | |
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| T |
30274108 |
ggaagttactcctatagcatctctagccactatgtaactgttatcacgagtatccaatagaacaaaggaaaagataccatccaacttgtccacaaagtct |
30274207 |
T |
|
| Q |
123 |
tctccatactcctcatactaa |
143 |
Q |
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|||||||| ||||| |||||| |
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| T |
30274208 |
tctccatattcctcgtactaa |
30274228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 235 - 341
Target Start/End: Original strand, 30274314 - 30274420
Alignment:
| Q |
235 |
tactaaccaggtgtgcaataacatcacagtcacattgtgtacgaaatttgtgattaggcaattgtttcctgaggtcttcatgattgtagatctctccatt |
334 |
Q |
| |
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||||||||| |||||||||||||||||| |||| | || || ||| ||||||||| || ||||||||||| ||||||| ||||| ||||||||||| |
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| T |
30274314 |
tactaaccaagtgtgcaataacatcacaatcacttcccgttcggaatgtgtgattagacagctgtttcctgagagcttcatggttgtaaatctctccatt |
30274413 |
T |
|
| Q |
335 |
cacctga |
341 |
Q |
| |
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|||||| |
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|
| T |
30274414 |
tacctga |
30274420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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