View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_22 (Length: 247)
Name: NF14907_low_22
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 49107659 - 49107873
Alignment:
| Q |
16 |
ataggacagtataaagggatttagatatgtaaatagtctatctttaaaaatataatatacacgaccattttataagttgaatgatctttacgaccatgaa |
115 |
Q |
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| T |
49107659 |
ataggacaatataaagagatttagatatgtaaatagtcaatctttaaaaatataatatacatgaccattttataagtcgaatgatctttacgaccatgaa |
49107758 |
T |
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| Q |
116 |
ttttctcatgtgtaatttacacatgagagagtaaaatgtaatctctaatcattaattgagtaagactttaatttc-ttatatgtaaactagagatggaga |
214 |
Q |
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| T |
49107759 |
ttttctcatgtgtaatttacacgtgagagagtaaaatgtaatctctaatcattaattgagtaagactttaatttctttatatgtaaactacagatggaga |
49107858 |
T |
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| Q |
215 |
atccgctccctctct |
229 |
Q |
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| T |
49107859 |
atccgctccctctct |
49107873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 3229144 - 3229094
Alignment:
| Q |
119 |
tctcatgtgtaatttacacatgagagagtaaaatgtaatctctaatcatta |
169 |
Q |
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| T |
3229144 |
tctcatgtgtaatttacacatgagagaataaagtgtgatctctaaccatta |
3229094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 3238258 - 3238294
Alignment:
| Q |
123 |
atgtgtaatttacacatgagagagtaaaatgtaatct |
159 |
Q |
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| T |
3238258 |
atgtgtaatttacacattagagagtaaagtgtaatct |
3238294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 14447050 - 14447086
Alignment:
| Q |
120 |
ctcatgtgtaatttacacatgagagagtaaaatgtaa |
156 |
Q |
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| T |
14447050 |
ctcatgtgtaatttacacatgagagagtaaagtgtaa |
14447086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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